Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GOM47_RS02680 Genome accession   NZ_CP046524
Coordinates   508833..509429 (+) Length   198 a.a.
NCBI ID   WP_000966747.1    Uniprot ID   A0ABT6PDM9
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 503833..514429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS02665 (GOM47_02655) - 504458..505222 (+) 765 WP_235080978.1 class I SAM-dependent methyltransferase -
  GOM47_RS02670 (GOM47_02660) - 505669..506520 (-) 852 WP_235080979.1 MurR/RpiR family transcriptional regulator -
  GOM47_RS02675 (GOM47_02665) pbp2b 506777..508822 (+) 2046 WP_235080980.1 penicillin-binding protein PBP2B -
  GOM47_RS02680 (GOM47_02670) recR 508833..509429 (+) 597 WP_000966747.1 recombination mediator RecR Machinery gene
  GOM47_RS02685 (GOM47_02675) - 509595..510638 (+) 1044 WP_235080981.1 D-alanine--D-alanine ligase -
  GOM47_RS02690 (GOM47_02680) - 510723..512096 (+) 1374 WP_235080982.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GOM47_RS02695 (GOM47_02685) - 512083..512694 (+) 612 WP_235080983.1 NUDIX hydrolase N-terminal domain-containing protein -
  GOM47_RS02700 (GOM47_02690) - 512785..513489 (+) 705 WP_235080984.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.81 Da        Isoelectric Point: 4.4927

>NTDB_id=352792 GOM47_RS02680 WP_000966747.1 508833..509429(+) (recR) [Streptococcus oralis strain SOT]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGRLTDDDPCSICTDPSRDQS
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYISRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=352792 GOM47_RS02680 WP_000966747.1 508833..509429(+) (recR) [Streptococcus oralis strain SOT]
ATGCTTTACCCAACACCTATAGCCAAGCTGATTGACAGTTATTCTAAACTTCCAGGTATCGGGATTAAGACAGCTACCCG
CCTGGCCTTTTATACCATTGGGATGTCGGATGACGATGTCAATGAATTTGCAAAAAATCTCCTTGCAGCCAAGCGAGAAT
TGACCTATTGCTCTATTTGTGGGCGTTTGACAGATGATGATCCTTGCTCGATCTGTACCGATCCTAGCCGTGACCAGTCT
ACGATTCTGGTTTTGGAGGATAGCCGAGATGTCGCTGCCATGGAAAATATCCAGGAATATCACGGACTTTACCATGTTTT
ACACGGTTTGATTTCCCCTATGAATGGGATTAGCCCAGATGACATCAACCTGAAAAGTCTCATGACTCGCCTCATGGATA
GTGAAGTTTCTGAGGTCATCGTAGCCACCAATGCAACAGCAGATGGTGAGGCGACCTCCATGTATATCTCTCGGCTACTC
AAACCCGCGGGGATTAAGGTTACTCGTCTAGCACGAGGTCTAGCAGTAGGAGCTGATATCGAATATGCGGACGAAGTAAC
GCTCCTAAGAGCTATTGAAAATCGTACAGAACTTTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

97.475

100

0.975
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485