Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MGAS1882_RS08600 Genome accession   NC_017053
Coordinates   1765318..1766424 (+) Length   368 a.a.
NCBI ID   WP_014407981.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS1882     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1760318..1771424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGAS1882_RS08580 (MGAS1882_1774) hasA 1760996..1762255 (+) 1260 WP_014407978.1 hyaluronan synthase HasA -
  MGAS1882_RS08585 (MGAS1882_1775) hasB 1762291..1763499 (+) 1209 WP_014411920.1 UDP-glucose 6-dehydrogenase HasB -
  MGAS1882_RS08590 (MGAS1882_1776) hasC 1763681..1764595 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  MGAS1882_RS08595 (MGAS1882_1777) yaaA 1764903..1765316 (+) 414 WP_014407980.1 S4 domain-containing protein YaaA -
  MGAS1882_RS08600 (MGAS1882_1778) recF 1765318..1766424 (+) 1107 WP_014407981.1 DNA replication/repair protein RecF Machinery gene
  MGAS1882_RS08605 (MGAS1882_1779) - 1766479..1767342 (-) 864 WP_002992310.1 GRP family sugar transporter -
  MGAS1882_RS08610 (MGAS1882_1780) guaB 1767545..1769026 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  MGAS1882_RS08615 (MGAS1882_1781) trpS 1769334..1770356 (-) 1023 WP_002982013.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41867.82 Da        Isoelectric Point: 7.8294

>NTDB_id=35267 MGAS1882_RS08600 WP_014407981.1 1765318..1766424(+) (recF) [Streptococcus pyogenes MGAS1882]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINVMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=35267 MGAS1882_RS08600 WP_014407981.1 1765318..1766424(+) (recF) [Streptococcus pyogenes MGAS1882]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGTA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGTGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462

Multiple sequence alignment