Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GE024_RS07425 Genome accession   NZ_CP046521
Coordinates   1467587..1468183 (-) Length   198 a.a.
NCBI ID   WP_003044231.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462587..1473183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS07410 (GE024_07425) - 1464005..1464700 (-) 696 WP_093998777.1 TIGR02206 family membrane protein -
  GE024_RS07415 (GE024_07430) murF 1464787..1466172 (-) 1386 WP_093998778.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GE024_RS07420 (GE024_07435) - 1466371..1467417 (-) 1047 WP_093998779.1 D-alanine--D-alanine ligase -
  GE024_RS07425 (GE024_07440) recR 1467587..1468183 (-) 597 WP_003044231.1 recombination mediator RecR Machinery gene
  GE024_RS07430 (GE024_07445) pbp2b 1468195..1470258 (-) 2064 WP_093998780.1 penicillin-binding protein PBP2B -
  GE024_RS07435 (GE024_07450) - 1470362..1471132 (-) 771 WP_093998781.1 formate/nitrite transporter family protein -
  GE024_RS07440 (GE024_07455) - 1471265..1471807 (-) 543 WP_093998782.1 hypothetical protein -
  GE024_RS07445 (GE024_07460) - 1471923..1472444 (-) 522 WP_003044242.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21727.92 Da        Isoelectric Point: 5.0690

>NTDB_id=352605 GE024_RS07425 WP_003044231.1 1467587..1468183(-) (recR) [Streptococcus canis strain HL_100]
MLYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKRLITRLMDGKVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=352605 GE024_RS07425 WP_003044231.1 1467587..1468183(-) (recR) [Streptococcus canis strain HL_100]
GTGCTTTACCCAACCCCTATTGCAAAATTAATTGAAAGTTATTCCAAACTCCCAGGAATCGGGGTTAAAACGGCAACCAG
ACTTGCCTTTTACACGATTGGAATGTCTAATGAAGACGTTAATGATTTTGCTAAAAATTTATTGGCCGCTAAGAGAGAAC
TGACCTATTGTTCGATTTGCGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTAATTTCGCCCATGAATGGTGTGGGGCCAGATGACATCAATCTTAAACGTTTAATTACCCGTTTAATGGATG
GTAAGGTGACCGAAGTTATCGTAGCTACTAATGCTACAGCTGATGGGGAGGCAACGTCCATGTATATCTCACGGGTCTTG
AAGCCAGCAGGAATCAAGGTAACCCGCTTAGCAAGAGGTCTCGCTGTTGGCTCAGATATTGAGTATGCTGATGAAGTGAC
CCTACTAAGAGCTATTGAAAATCGGACAGAGCTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5

Multiple sequence alignment