Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GE024_RS04055 Genome accession   NZ_CP046521
Coordinates   799908..801137 (+) Length   409 a.a.
NCBI ID   WP_093998560.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 794908..806137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS11400 (GE024_04050) - 795148..795402 (+) 255 WP_138114135.1 IS3 family transposase -
  GE024_RS04030 (GE024_04055) - 795500..796774 (-) 1275 WP_093998558.1 hydroxymethylglutaryl-CoA reductase, degradative -
  GE024_RS04035 (GE024_04060) - 796761..797936 (-) 1176 WP_156667683.1 hydroxymethylglutaryl-CoA synthase -
  GE024_RS04040 (GE024_04065) - 798144..798983 (+) 840 WP_003048159.1 thymidylate synthase -
  GE024_RS04045 (GE024_04070) - 799063..799560 (+) 498 WP_003048161.1 dihydrofolate reductase -
  GE024_RS04055 (GE024_04075) clpX 799908..801137 (+) 1230 WP_093998560.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GE024_RS04060 (GE024_04080) yihA 801147..801746 (+) 600 WP_003048167.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GE024_RS04065 (GE024_04085) - 801896..802636 (+) 741 WP_093998561.1 hypothetical protein -
  GE024_RS04070 (GE024_04090) - 802765..803729 (-) 965 Protein_747 IS30 family transposase -
  GE024_RS04075 (GE024_04095) - 803874..804689 (-) 816 WP_156667684.1 IS982 family transposase -
  GE024_RS04080 (GE024_04100) - 804770..805183 (-) 414 WP_138114141.1 hypothetical protein -
  GE024_RS04085 (GE024_04105) - 805203..805361 (-) 159 WP_138114144.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45000.54 Da        Isoelectric Point: 4.6207

>NTDB_id=352585 GE024_RS04055 WP_093998560.1 799908..801137(+) (clpX) [Streptococcus canis strain HL_100]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLNILNQYVVGQDR
AKRTLAVAVYNHYKRVSFAESRDDEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIASKAIERKTGARGLRSIIEETMLDIMFEVPSQEDVTKVRITKAAVEG
KAKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=352585 GE024_RS04055 WP_093998560.1 799908..801137(+) (clpX) [Streptococcus canis strain HL_100]
ATGGCAGGAAATCGTACTAACGATATTAAGGTATATTGTTCATTTTGTGGCAAAAGCCAAGATGAAGTCAAAAAAATCAT
TGCAGGGAACAACGTTTTTATTTGTAATGAATGTGTAGCCCTATCACAAGAAATTATCAAAGAAGAATTGGCAGAAGAAG
TACTGGCTGATTTAACAGAGGTTCCAAAACCAAAAGAACTTCTTAATATTTTAAACCAATACGTGGTTGGTCAAGACCGT
GCCAAACGGACCTTAGCAGTTGCAGTCTATAATCATTACAAGCGTGTTTCATTTGCTGAAAGCCGTGATGACGAAGATGT
TGATTTGCAAAAATCAAATATTTTAATGATTGGCCCAACAGGCTCTGGAAAGACGTTTTTGGCACAGACATTGGCTAAGA
GTTTAAATGTGCCTTTTGCTATTGCAGATGCTACCTCCTTAACAGAAGCTGGATATGTGGGAGAGGACGTTGAAAATATC
CTTCTCAAACTGATTCAAGCAGCGGATTATAATGTGGAGCGAGCAGAGCGTGGCATCATTTATGTTGATGAAATTGATAA
GATTGCTAAAAAAGGTGAGAATGTGTCCATCACACGAGATGTGTCAGGCGAGGGAGTACAACAGGCTCTGTTAAAAATTA
TTGAAGGTACTGTTGCGAGTGTTCCTCCTCAAGGTGGGCGAAAGCACCCCAATCAGGAAATGATTCAAATTGATACAAAA
AATATTTTATTCATTGTTGGTGGGGCATTTGATGGCATTGAGGAGATTGTTAAACAGCGTCTAGGGGAAAAAATCATTGG
TTTTGGTCAAAACAGCCGTAAAATTGATGATAATGCTTCTTACATGCAAGAAATTATATCAGAAGATATCCAAAAATTTG
GTCTTATTCCTGAATTTATTGGCCGTTTACCAGTTGTGGCAGCCCTTGAACAGCTTAACACCTCAGACTTGATCCAAATA
TTAACAGAGCCAAGAAATGCTCTTGTTAAACAATACCAAGCCTTGTTATCTTATGATGGTGTTGAATTAGAATTTGAGAA
GGGTGCCCTTGAAGCCATTGCAAGTAAAGCGATTGAACGCAAAACAGGAGCACGTGGTCTCCGTTCTATCATTGAAGAAA
CCATGTTGGACATTATGTTTGAAGTGCCAAGTCAAGAAGATGTGACTAAAGTTCGTATCACCAAGGCTGCAGTTGAAGGT
AAGGCAAAACCCGTTTTAGAAACAGCATAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.242

100

0.892
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577