Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   GE024_RS03590 Genome accession   NZ_CP046521
Coordinates   700612..704244 (+) Length   1210 a.a.
NCBI ID   WP_093998513.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 695612..709244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS03575 (GE024_03595) - 696311..697215 (-) 905 Protein_650 neutral zinc metallopeptidase -
  GE024_RS03585 (GE024_03605) rexB 697391..700615 (+) 3225 WP_138114114.1 ATP-dependent nuclease subunit B Machinery gene
  GE024_RS03590 (GE024_03610) rexA 700612..704244 (+) 3633 WP_093998513.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GE024_RS03595 (GE024_03615) - 704383..705498 (+) 1116 WP_093998514.1 aminotransferase -
  GE024_RS03600 (GE024_03620) - 705566..706378 (+) 813 WP_093998515.1 transporter substrate-binding domain-containing protein -
  GE024_RS03605 (GE024_03625) rpsU 706480..706656 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  GE024_RS03610 (GE024_03630) mscL 706975..707349 (-) 375 WP_003047993.1 large conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 1210 a.a.        Molecular weight: 138135.27 Da        Isoelectric Point: 5.2657

>NTDB_id=352583 GE024_RS03590 WP_093998513.1 700612..704244(+) (rexA) [Streptococcus canis strain HL_100]
MITFEPFLSPEAIAQLQETESRSQAAQKRTPQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGVAIDRLFISTF
TVKAATELRDRIEKKLYAQIAQTTDYQLKAYLTEQLQTLSQADIGTMDAFAQKLVNHYGYSIGLSPRFRIMQDKAEQDIL
KQDVFSKLFETFMAQSDSSLFKALVKNFSGNRKDASAFRDLIYSCYSFSQSTENPREWLQETFLKAAKTYQRLEDIPLQD
IELLLASMHDTADQLRDLTDMEEYGQLTKAGKPTVKYINHLKVIDNLHHWARDFDHLYGRQGIGQLAKDLTTMLPSGNDV
TVAGTKYPIFKALHQKLTRFRHLETILAYQGESLPLLEVLQRFVVAFSDAYLAAKMQEAAFEFTDIAHFAIQILEENPDI
RQAYQQQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDMKQSIYRFRQADPQIFNQKFKDYQAHPEQGKLILLKENF
RSQSEVLDASNAVFSHLMDESLGDILYDEQHQLVAGSDAQKVSYSEHRAKLLLYNTDRNDEVEEEDSDGLSPNEVNIVAK
EIIRLHNDQGVPFEDITLLVSTRTRNDAIFHAFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRS
PMFAFDEDELARLALQKGSDQDTTCLYDKLEKALLGTGAHSDLVHDELMAKLSGFMETLKNWRRYAKIKSLHDLIWKIFN
DRFYFDLVASQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETKNDLADVEVTSPKQAVNLMTIHKSKGLE
FQYVFILNCDKRFAMTDVHAPFILNRQQGIGIKYLADVKEFLGEETLASVKVSMETLPYQLNQQELRLATLSEQMRLLYV
AMTRAEKQLFLVGKASKQKSQELTDGKHTGKLLPLALREQLMTFQDWLLAITDTFTTEDLCFDVCFIEDSDLSPEVIGQL
QNPQVLHPDNLKDNRQSADIVRALDMLDKVSQLNADYEAAINLPTVRTPSQLKASYEPLLDSEGVEVMEKTYHTSTAFTL
PDFSKQVRVDASQVGSALHQLMQAIPLAYPVTAKTIAHALEQLELDQAVKAALDMVKVEQFFDKTVLGQQFQTYHRNLYR
EAPFAMLKTDPISQEDYVVRGIIDAFLLFEDHIELVDYKTDKYQNSLELKNRYQQQLTLYAEALTQTYGLPVTKKYLVLM
GGKKLEIVNI

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=352583 GE024_RS03590 WP_093998513.1 700612..704244(+) (rexA) [Streptococcus canis strain HL_100]
GTGATAACATTTGAACCCTTTTTAAGCCCAGAAGCTATTGCTCAATTACAAGAAACAGAAAGCCGTAGTCAAGCAGCTCA
AAAAAGAACCCCCCAGCAGATTGAAGCCATATACAGTAGCGGTCAAAATATCCTTGTGTCAGCCTCTGCTGGGTCAGGAA
AAACCTTTGTGATGGTAGAACGCATTCTTGATAAAATCCTGAGAGGAGTTGCTATTGATCGGTTATTTATTTCCACCTTT
ACCGTTAAGGCAGCTACGGAATTGCGTGACCGTATTGAGAAAAAATTGTATGCTCAAATCGCTCAAACGACAGATTATCA
GCTAAAAGCCTACCTAACAGAGCAGCTGCAGACCCTGTCTCAGGCAGATATTGGCACCATGGATGCCTTTGCCCAAAAGT
TGGTCAATCACTATGGTTATAGCATTGGTTTGTCGCCTCGATTTCGTATTATGCAAGATAAGGCCGAGCAAGATATTTTA
AAACAGGACGTTTTTAGCAAGCTATTTGAAACCTTTATGGCACAAAGTGATTCTTCTTTGTTCAAAGCACTGGTTAAAAA
TTTTTCTGGTAACCGAAAAGATGCATCCGCTTTTAGAGATCTGATTTATAGCTGTTATTCTTTTAGCCAATCTACCGAAA
ACCCAAGAGAATGGTTGCAAGAAACGTTCTTAAAAGCAGCAAAAACCTATCAGCGCCTTGAAGATATACCTCTGCAAGAC
ATTGAATTGTTGTTGGCAAGCATGCATGATACCGCAGATCAGTTAAGAGATTTGACTGACATGGAAGAATATGGTCAACT
GACCAAGGCTGGTAAACCAACGGTCAAATATATTAACCACCTAAAGGTTATTGACAATCTTCATCATTGGGCGCGGGATT
TTGACCATCTCTATGGTAGGCAAGGAATTGGCCAATTGGCTAAAGACTTGACCACAATGCTCCCTTCTGGCAATGACGTG
ACTGTTGCTGGTACCAAGTATCCTATTTTTAAAGCCTTACACCAAAAATTAACACGCTTTAGACACTTAGAGACGATTTT
GGCATACCAAGGGGAAAGTCTTCCCTTGTTGGAAGTGTTGCAACGTTTTGTCGTAGCCTTTTCAGATGCCTATCTGGCCG
CTAAGATGCAAGAAGCAGCCTTTGAATTTACAGATATTGCCCATTTTGCCATTCAGATTTTAGAAGAAAACCCTGACATC
AGACAGGCCTACCAGCAGCAGTATCACGAAGTCATGGTTGATGAATACCAAGATAACAACCACATGCAGGAGCGCTTATT
AACTTTATTATCAAATGGTCATAATCGTTTTATGGTTGGTGATATGAAGCAATCCATTTACCGATTTCGACAAGCAGATC
CTCAAATTTTCAATCAGAAATTCAAAGACTATCAGGCTCATCCTGAGCAAGGGAAGCTTATTTTACTGAAAGAAAATTTC
CGAAGCCAATCAGAAGTTTTGGATGCCAGTAATGCTGTTTTTAGCCATTTGATGGATGAATCTCTGGGAGACATTTTATA
CGATGAGCAACATCAGTTGGTTGCTGGTAGCGATGCCCAAAAAGTGTCCTATTCTGAACATCGTGCTAAATTATTGCTTT
ATAACACTGACCGAAATGACGAAGTAGAAGAGGAAGATTCTGATGGCTTATCACCTAATGAGGTGAATATTGTTGCCAAA
GAAATCATCCGATTGCATAATGACCAAGGAGTACCTTTTGAAGACATCACCCTTCTTGTCTCAACAAGGACAAGAAATGA
TGCTATTTTTCATGCCTTTAATCAGTATGGTATCCCACTAGTAGCTGACGGTGGTCAGCAAAATTACCTCAAATCGGTTG
AAGTCATGGTCATGTTGGATACCTTGAGAACCATTAATAACCCAAGGAATGATTATGCCCTTGTTGCCCTGTTGCGCTCA
CCAATGTTTGCCTTTGATGAGGACGAATTAGCAAGGCTGGCGCTTCAAAAAGGCAGTGACCAAGATACTACTTGTCTTTA
TGACAAATTGGAAAAGGCCTTACTTGGAACGGGTGCTCACTCAGACTTAGTGCATGATGAGTTAATGGCAAAATTAAGTG
GTTTTATGGAAACCTTAAAGAATTGGCGTCGTTATGCTAAAATCAAATCTTTGCATGACCTCATTTGGAAAATTTTCAAT
GACCGATTTTACTTCGATCTGGTTGCTAGTCAAGCCAAGGCTGAGCAGGCCCAAGCCAATCTTTATGCGCTAGCCCTGCG
TGCCAATCAATTTGAGCAATCAGGATACAAAGGGTTATCTCGCTTTATTGGCATGATTGACAAGGTGTTAGAAACGAAAA
ATGATTTAGCAGACGTTGAAGTAACTAGTCCTAAGCAAGCGGTCAATCTCATGACGATTCACAAATCCAAGGGATTGGAA
TTCCAGTACGTGTTTATCCTTAACTGTGACAAACGCTTTGCCATGACAGATGTTCATGCTCCGTTTATTTTAAATCGTCA
GCAGGGTATTGGAATCAAGTACTTGGCTGATGTTAAGGAGTTTTTGGGTGAAGAAACCTTAGCGTCAGTCAAAGTGAGTA
TGGAAACCTTGCCTTATCAGTTGAATCAGCAAGAGTTACGCTTGGCAACCTTATCTGAACAAATGCGGCTGTTGTACGTT
GCCATGACACGAGCTGAGAAACAACTTTTCCTTGTTGGAAAAGCCAGCAAGCAAAAAAGCCAAGAGTTGACAGATGGTAA
GCATACTGGTAAGTTGTTGCCTTTAGCGCTTCGAGAACAGTTGATGACTTTCCAAGACTGGCTCTTGGCTATCACAGATA
CCTTCACCACTGAAGACCTTTGTTTTGATGTGTGCTTTATTGAGGATAGCGACTTAAGTCCAGAGGTTATTGGTCAACTT
CAAAATCCACAAGTATTACATCCAGACAACCTCAAGGATAACCGTCAATCTGCGGACATTGTGCGTGCCTTAGATATGCT
AGACAAAGTGTCTCAATTAAATGCTGACTATGAAGCGGCCATCAATCTCCCAACGGTTCGCACGCCTAGCCAATTAAAGG
CTTCCTATGAGCCCTTGTTAGACTCAGAGGGGGTAGAGGTCATGGAAAAAACTTACCACACCTCTACAGCCTTTACTTTA
CCTGATTTTTCAAAACAGGTCAGAGTTGACGCTAGCCAAGTTGGGTCAGCCCTCCACCAATTGATGCAGGCCATTCCCTT
GGCTTATCCAGTGACAGCCAAAACAATCGCACATGCTCTAGAGCAACTAGAGTTGGACCAAGCGGTTAAGGCAGCTCTTG
ATATGGTGAAAGTTGAGCAATTCTTTGATAAGACAGTCTTGGGGCAGCAGTTTCAGACCTATCACAGGAATTTGTACAGA
GAAGCGCCTTTTGCCATGTTAAAAACAGATCCTATTAGTCAAGAAGACTATGTTGTTCGGGGAATCATTGATGCTTTTCT
CTTATTTGAGGATCATATTGAACTAGTGGATTATAAAACGGATAAATACCAAAATTCTTTGGAGTTAAAAAACCGTTACC
AACAACAGTTGACTTTATATGCAGAAGCCCTTACTCAGACCTATGGTCTTCCTGTAACCAAGAAATATTTGGTTCTAATG
GGAGGCAAAAAATTGGAAATTGTCAATATCTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(30-465)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1189)

UvrD-like helicase C-terminal domain (UvrD_C)

(474-892)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

48.211

100

0.49