Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   GE024_RS03585 Genome accession   NZ_CP046521
Coordinates   697391..700615 (+) Length   1074 a.a.
NCBI ID   WP_138114114.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 692391..705615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS11125 - 694575..694867 (-) 293 Protein_646 integrase core domain-containing protein -
  GE024_RS03560 (GE024_03580) - 694838..695022 (+) 185 Protein_647 IS3 family transposase -
  GE024_RS03565 (GE024_03585) - 695147..695524 (+) 378 WP_093998511.1 OsmC family protein -
  GE024_RS03570 (GE024_03590) - 695517..695939 (+) 423 Protein_649 DUF1722 domain-containing protein -
  GE024_RS03575 (GE024_03595) - 696311..697215 (-) 905 Protein_650 neutral zinc metallopeptidase -
  GE024_RS03585 (GE024_03605) rexB 697391..700615 (+) 3225 WP_138114114.1 ATP-dependent nuclease subunit B Machinery gene
  GE024_RS03590 (GE024_03610) rexA 700612..704244 (+) 3633 WP_093998513.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GE024_RS03595 (GE024_03615) - 704383..705498 (+) 1116 WP_093998514.1 aminotransferase -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123307.46 Da        Isoelectric Point: 6.0703

>NTDB_id=352582 GE024_RS03585 WP_138114114.1 697391..700615(+) (rexB) [Streptococcus canis strain HL_100]
MKLIYTEMAYSMTEILVAEARQAARQGYRVFYLAPNSLSFEKEREVLTLLPERGSFSITVTRFAQMARYFTFTSSRPKQH
LDDMSLAMIFYRALMTLGPEELSVYGRLKDDHAFVKQLVDLYKELQTAHISVYELTDLDTPEKQGDLIKIISLAEHIMAQ
QDYNQDTSLMTFARAIEAGLLNDQLANTVIIIDGFSRFSAEEEYLLSLLNDTCQAVVIGSYISQKAYQKSFIKGNIYEAS
RHFLQDLAQKYQTKPVFAVSEQTFAPAFSRLTQLVEANHDFSQLDWQLQEEDKASIHLWQSPHQKEEIEHVAKAIREKLY
QGYRYKDILVLLGDVEAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSLRYNWRREDILNLLKSGLFRTFTD
QDIDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNVIREAVFSPLQTLFKSQKQLGASLIDKLMAFFKVIQLSENM
KNLGQSQLEIEKNEEVWKTFSDSLTSCYQIFGQEKLKLADCLALIKMGMQSAHYRVVPATLDVVSVKSYDLVQPHSKPFV
YAIGLTQSHFPKQVTITGLLSDQERVRVNESLNSYQHFDIASAENSQKNHQTALSLFNAATKELVLSVPTVVNELSDDLS
PYLKELMALGFPLLDKGKNCLSYAASDIGNYKALLSRVIDINRQAILADMTDQDKTFWTVALRYLKRRLREKQLTLPTQD
NHLATKPLTPQVIEARFPSDRPLNLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMKDQTAES
FDNKLTQAIHHTNQEHLFQQVYQNNAEARYSLDLLEDIAKSTASILRLSQNVKVISQEKSFELNVTDQVLVHGVIDRIDQ
LDDGSLGVVDYKSSASQFDIGTFYNGLSSQLITYLAVLQQQFEPADQEHLFGAMYLHLQDPKMDLSAFKTLDDKLVESLY
KALTYKGIFLENEKEHLATGAYQIRNALYSVDELQTLLAYNNHLYLKAAEHIKKGHFLINPYTSDGKSVQGDQLKAITRF
EADLDLGQARRLLTLPARNKRDNFLSLMREEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=352582 GE024_RS03585 WP_138114114.1 697391..700615(+) (rexB) [Streptococcus canis strain HL_100]
ATGAAACTAATTTACACAGAGATGGCCTACTCAATGACAGAGATTTTGGTAGCTGAGGCAAGGCAGGCTGCTCGTCAGGG
TTATCGCGTATTTTATCTTGCGCCCAATTCCCTCTCCTTTGAAAAAGAAAGAGAGGTGCTGACTCTCTTACCTGAACGAG
GCTCTTTTTCAATCACAGTCACACGATTTGCTCAGATGGCTCGGTACTTTACTTTTACGAGTTCTCGTCCAAAACAGCAT
TTGGATGATATGTCTCTGGCCATGATTTTTTATCGTGCCTTGATGACGTTAGGTCCTGAAGAACTGTCTGTTTATGGTCG
GTTAAAAGATGACCATGCTTTTGTTAAGCAGTTGGTTGACTTGTATAAGGAATTACAAACCGCTCATATAAGTGTTTATG
AGTTAACTGATTTAGACACGCCAGAAAAGCAAGGAGACTTGATCAAGATAATCAGTCTTGCTGAGCACATCATGGCTCAA
CAAGATTACAACCAAGACACCTCTTTGATGACCTTTGCGAGGGCAATTGAAGCTGGTCTATTGAATGACCAATTGGCAAA
CACCGTTATTATCATTGATGGTTTTTCACGTTTTTCTGCTGAAGAAGAGTATCTCTTGTCTTTGTTAAATGATACCTGCC
AGGCAGTTGTGATTGGCAGTTACATTAGCCAAAAAGCCTACCAGAAATCCTTTATCAAAGGAAATATTTATGAAGCAAGT
CGTCACTTTTTACAAGACCTTGCTCAGAAGTACCAGACTAAGCCCGTATTTGCTGTTTCTGAACAAACCTTTGCTCCAGC
CTTTTCAAGGTTAACTCAATTAGTGGAAGCCAATCATGATTTTTCCCAACTGGATTGGCAGTTGCAGGAGGAAGATAAGG
CATCTATTCATCTTTGGCAAAGCCCTCACCAAAAAGAAGAAATAGAACACGTGGCCAAGGCCATTCGTGAAAAACTCTAC
CAAGGGTATCGCTATAAGGATATTTTAGTTCTGTTAGGAGATGTCGAAGCCTATCAGTTGCAAATTGGTCCTATCTTTGA
CAAGTTTGAGATTCCTTATTATTTAGGAAAAGCAGAGCCTATGACTGCCCATCCTTTGGTTCAGTTTATAGAATCTCTTG
AGCGAAGTTTGCGCTATAATTGGCGCCGTGAGGACATTTTAAATTTACTAAAATCAGGTCTTTTTAGAACCTTTACAGAC
CAAGACATCGATCGGTTTGAAGAATACCTTCAGTTTGCAGATATTAAAGGGTTCACCAAATTTTCAAGACCTTTTACCAT
AAATTCCTCTCGTCATTACCCACTGGAGCTGTTAAACGTGATAAGAGAGGCGGTCTTTTCTCCGTTACAAACGTTATTTA
AAAGTCAAAAGCAACTTGGAGCTTCTTTGATAGACAAGCTCATGGCTTTTTTTAAGGTTATTCAACTGTCTGAAAATATG
AAAAATTTGGGACAAAGTCAGCTAGAAATAGAAAAAAATGAAGAAGTTTGGAAAACATTTTCAGACAGTTTAACCTCTTG
TTACCAGATTTTCGGGCAGGAAAAATTAAAGTTGGCAGACTGTTTGGCACTTATCAAAATGGGAATGCAATCCGCCCATT
ATCGGGTTGTACCAGCGACCTTGGATGTCGTATCGGTAAAATCTTATGATCTGGTTCAGCCTCATTCAAAACCCTTTGTC
TATGCCATCGGCCTCACCCAATCTCACTTTCCAAAACAAGTGACAATAACGGGGCTTCTGTCAGATCAAGAACGTGTCAG
GGTAAATGAAAGCTTGAACAGTTACCAACATTTTGATATTGCCAGTGCGGAAAATAGCCAGAAAAATCACCAAACTGCTC
TATCTCTGTTTAATGCTGCTACTAAAGAATTGGTTCTTAGCGTGCCAACAGTGGTCAATGAACTGTCAGACGACCTCTCT
CCTTACCTCAAGGAATTGATGGCGCTTGGATTTCCTCTTTTGGATAAAGGAAAGAATTGCTTATCCTATGCTGCCAGTGA
TATTGGCAATTACAAGGCCCTTTTATCACGTGTTATTGATATTAATCGTCAGGCCATACTAGCTGATATGACGGATCAAG
ACAAGACTTTTTGGACGGTTGCCTTGCGTTACTTGAAACGACGATTAAGGGAAAAGCAGTTAACCCTTCCAACTCAAGAT
AATCACTTGGCAACAAAACCCTTGACTCCCCAAGTCATTGAAGCTCGATTTCCAAGTGATCGTCCTTTAAATCTATCTTC
GACTGCCTTGACGGTCTTTTATAATAACCAGTACAAGTATTTTCTACAATATGTTTTGGGCTTGCAAGAAGCTGAATCCA
TCCATCCTGATGCCAGAATTCATGGTCAATATTTACACCGCGTGTTTGAATTAGTCATGAAAGATCAGACAGCAGAATCC
TTTGACAATAAATTGACCCAAGCCATTCATCACACCAATCAGGAGCATCTTTTTCAGCAGGTTTATCAAAATAACGCTGA
AGCGAGGTACAGTTTAGACCTACTAGAAGATATTGCCAAGTCAACTGCCTCTATTTTACGACTTAGCCAAAATGTCAAGG
TTATTAGCCAAGAAAAATCCTTTGAACTAAATGTGACAGATCAGGTGCTGGTTCATGGTGTTATTGACCGGATTGACCAA
TTAGATGATGGTAGTTTAGGAGTTGTTGACTATAAATCTAGCGCTAGCCAATTTGATATTGGAACATTTTACAATGGCTT
GAGCTCGCAACTAATTACATACCTCGCTGTTTTACAGCAGCAGTTTGAACCAGCTGACCAAGAGCATTTATTTGGAGCTA
TGTATCTGCATCTGCAGGATCCTAAAATGGATTTATCAGCTTTCAAAACCCTAGATGACAAACTGGTTGAAAGCCTTTAT
AAGGCATTAACTTATAAAGGTATTTTCTTGGAAAATGAAAAAGAGCATTTGGCGACGGGTGCCTACCAAATTAGAAATGC
CCTTTATTCGGTGGACGAGCTTCAAACCCTCTTGGCTTATAACAATCACCTTTACCTTAAAGCAGCAGAACACATTAAAA
AAGGGCACTTCCTGATTAACCCTTATACCAGTGATGGCAAGTCTGTGCAAGGAGACCAACTAAAAGCCATTACCCGATTT
GAAGCAGACCTTGACTTAGGTCAAGCAAGGCGATTGTTGACCCTGCCTGCTAGAAATAAACGAGATAACTTTTTAAGTCT
AATGAGAGAGGAGGACAACTTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(745-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

41.332

100

0.422