Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | EOJ31_RS12600 | Genome accession | NZ_CP038242 |
| Coordinates | 1314739..1315179 (+) | Length | 146 a.a. |
| NCBI ID | WP_015364970.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain GD01 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1309739..1320179
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EOJ31_RS06575 | - | 1310235..1310438 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| EOJ31_RS06580 | - | 1310435..1311421 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| EOJ31_RS06585 | - | 1311421..1311744 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| EOJ31_RS06590 | - | 1311748..1312371 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| EOJ31_RS06595 | comGA | 1312418..1313392 (+) | 975 | WP_002465784.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EOJ31_RS06600 | comGB | 1313364..1314431 (+) | 1068 | WP_002465743.1 | competence type IV pilus assembly protein ComGB | - |
| EOJ31_RS06605 | comGC | 1314444..1314761 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EOJ31_RS12600 | comGD | 1314739..1315179 (+) | 441 | WP_015364970.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EOJ31_RS06610 | - | 1315377..1315874 (+) | 498 | WP_002465737.1 | competence type IV pilus minor pilin ComGF | - |
| EOJ31_RS06615 | - | 1316033..1316551 (+) | 519 | WP_037539765.1 | shikimate kinase | - |
| EOJ31_RS06620 | gcvT | 1316723..1317814 (+) | 1092 | WP_002465750.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EOJ31_RS06625 | gcvPA | 1317833..1319182 (+) | 1350 | WP_015364973.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 17009.34 Da Isoelectric Point: 10.5759
>NTDB_id=352518 EOJ31_RS12600 WP_015364970.1 1314739..1315179(+) (comGD) [Staphylococcus warneri strain GD01]
MAKRLQIKAYNYIEILMVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEEHGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL
MAKRLQIKAYNYIEILMVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEEHGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL
Nucleotide
Download Length: 441 bp
>NTDB_id=352518 EOJ31_RS12600 WP_015364970.1 1314739..1315179(+) (comGD) [Staphylococcus warneri strain GD01]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATATTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATATTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Staphylococcus aureus MW2 |
48.993 |
100 |
0.5 |
| comGD | Staphylococcus aureus N315 |
48.993 |
100 |
0.5 |