Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EOJ31_RS07965 Genome accession   NZ_CP038242
Coordinates   1630693..1631568 (-) Length   291 a.a.
NCBI ID   WP_370657649.1    Uniprot ID   -
Organism   Staphylococcus warneri strain GD01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1625693..1636568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EOJ31_RS07950 xerC 1625958..1626851 (-) 894 WP_002466041.1 tyrosine recombinase XerC -
  EOJ31_RS07955 trmFO 1627016..1628323 (-) 1308 WP_002466058.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EOJ31_RS07960 topA 1628440..1630515 (-) 2076 WP_026088907.1 type I DNA topoisomerase -
  EOJ31_RS07965 dprA 1630693..1631568 (-) 876 WP_370657649.1 DNA-processing protein DprA Machinery gene
  EOJ31_RS07970 sucD 1631803..1632708 (-) 906 WP_002466045.1 succinate--CoA ligase subunit alpha -
  EOJ31_RS07975 sucC 1632730..1633896 (-) 1167 WP_002466034.1 ADP-forming succinate--CoA ligase subunit beta -
  EOJ31_RS07980 - 1634004..1634774 (-) 771 WP_002466053.1 ribonuclease HII -
  EOJ31_RS07985 ylqF 1634767..1635642 (-) 876 WP_189723343.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33939.05 Da        Isoelectric Point: 8.6890

>NTDB_id=352510 EOJ31_RS07965 WP_370657649.1 1630693..1631568(-) (dprA) [Staphylococcus warneri strain GD01]
MNLNENFLLKLYWSHFTTSQIHQFYRYNPHIFQMTSNEQEISLLYWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDEDYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN

Nucleotide


Download         Length: 876 bp        

>NTDB_id=352510 EOJ31_RS07965 WP_370657649.1 1630693..1631568(-) (dprA) [Staphylococcus warneri strain GD01]
ATGAATTTGAACGAAAACTTTTTACTTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CAACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAATTTCATTATTATATTGGATTACTCAACATCATCCTACGC
TTTTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAGATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

55.986

97.595

0.546
  dprA Staphylococcus aureus N315

55.986

97.595

0.546

Multiple sequence alignment