Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EOJ31_RS04015 Genome accession   NZ_CP038242
Coordinates   832600..832983 (+) Length   127 a.a.
NCBI ID   WP_002466750.1    Uniprot ID   -
Organism   Staphylococcus warneri strain GD01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 831712..831969 832600..832983 flank 631


Gene organization within MGE regions


Location: 831712..832983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EOJ31_RS04010 - 831972..832412 (-) 441 WP_002466783.1 YwpF-like family protein -
  EOJ31_RS04015 ssb 832600..832983 (+) 384 WP_002466750.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14533.42 Da        Isoelectric Point: 6.4556

>NTDB_id=352493 EOJ31_RS04015 WP_002466750.1 832600..832983(+) (ssb) [Staphylococcus warneri strain GD01]
MLNKIVLVGRLTKDAQIFEKEEGSKVATFCVATERNYKDQNNEIACDYLYCKAFGKTATNIEMYTSQGSLVGITGQMRSR
KYEKDNQTHFVTEVYVETIKFMSSKTKESNILSNEFNEAQNECFHIG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=352493 EOJ31_RS04015 WP_002466750.1 832600..832983(+) (ssb) [Staphylococcus warneri strain GD01]
ATGTTAAATAAAATAGTTTTAGTTGGCAGACTTACAAAGGATGCCCAAATTTTTGAAAAGGAGGAAGGTAGTAAAGTAGC
AACATTTTGCGTTGCTACGGAAAGAAATTATAAAGATCAGAACAATGAAATCGCATGCGATTACCTATATTGTAAAGCTT
TTGGTAAAACAGCTACGAATATCGAAATGTATACATCACAGGGTTCTTTAGTGGGTATTACAGGTCAAATGCGATCTCGT
AAGTATGAAAAAGATAATCAGACACATTTTGTAACTGAAGTATATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAACGAATTTAATGAAGCACAAAATGAATGCTTTCATATAGGTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

78.07

89.764

0.701
  ssb Staphylococcus aureus MW2

77.193

89.764

0.693

Multiple sequence alignment