Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EOJ31_RS01265 Genome accession   NZ_CP038242
Coordinates   279615..280280 (+) Length   221 a.a.
NCBI ID   WP_002467354.1    Uniprot ID   -
Organism   Staphylococcus warneri strain GD01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 274615..285280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EOJ31_RS01240 - 275210..275659 (+) 450 WP_002467363.1 MarR family winged helix-turn-helix transcriptional regulator -
  EOJ31_RS01245 - 275894..277360 (+) 1467 WP_019236103.1 poly-gamma-glutamate hydrolase family protein -
  EOJ31_RS01250 - 277541..277642 (+) 102 WP_015364644.1 SE2200 family small protein -
  EOJ31_RS01255 - 277725..279178 (-) 1454 Protein_248 alkaline phosphatase -
  EOJ31_RS01260 - 279435..279593 (+) 159 WP_002467360.1 hypothetical protein -
  EOJ31_RS01265 braR 279615..280280 (+) 666 WP_002467354.1 response regulator transcription factor Regulator
  EOJ31_RS01270 braS 280286..281182 (+) 897 WP_002467359.1 HAMP domain-containing sensor histidine kinase Regulator
  EOJ31_RS01275 - 281286..282032 (+) 747 WP_002467357.1 ABC transporter ATP-binding protein -
  EOJ31_RS01280 - 282050..284044 (+) 1995 WP_015364645.1 ABC transporter permease -
  EOJ31_RS01285 - 284167..285198 (+) 1032 WP_019236102.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25526.64 Da        Isoelectric Point: 4.9722

>NTDB_id=352488 EOJ31_RS01265 WP_002467354.1 279615..280280(+) (braR) [Staphylococcus warneri strain GD01]
MKILIVEDDLVIAESLANELKKWNYDVKMAKQFSHVLDDFKDYLPDLVLLDINLPTLNGFHWCQEMRKISNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSNNELNVKGCKLIVDEAKLMFQDDVTQLSLTELQIVK
LLFQNEGKFVNRTALIEKCWESENYIDDNTLAVNMTRLRKKLSQIGLTDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=352488 EOJ31_RS01265 WP_002467354.1 279615..280280(+) (braR) [Staphylococcus warneri strain GD01]
ATGAAGATTTTGATAGTAGAAGATGACTTAGTCATTGCAGAAAGTTTAGCGAATGAACTTAAGAAATGGAACTATGACGT
TAAGATGGCAAAACAGTTTTCACATGTTTTAGATGATTTCAAAGACTATCTACCTGACTTAGTACTACTAGATATTAATT
TACCAACTTTAAATGGCTTCCATTGGTGCCAAGAAATGAGAAAAATCTCAAACGTACCTATTATATTTATTAGTTCAAGG
ACAGATAATATGGATCAAATAATGGCGATACAAATGGGTGGCGATGATTTTATTGAGAAACCATTTAATTTATCGTTAAC
AGTTGCTAAAGTACAAGCTTTATTACGACGAACTTATGATTTAGCTGTATCTAATAACGAATTAAATGTTAAAGGGTGTA
AACTGATTGTTGATGAGGCTAAGTTAATGTTTCAAGATGATGTGACACAACTGTCTTTAACAGAACTTCAAATCGTTAAA
CTGTTGTTTCAAAATGAAGGTAAATTTGTAAATCGAACAGCTTTAATTGAAAAATGTTGGGAATCAGAGAATTATATTGA
TGATAATACTTTGGCTGTAAATATGACACGATTGCGAAAAAAATTAAGTCAAATTGGCTTAACAGATTTTATTGAAACGA
AGAAAAATGTGGGATATAGGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

78.733

100

0.787

Multiple sequence alignment