Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GFX43_RS13460 Genome accession   NZ_CP046448
Coordinates   2654010..2655032 (-) Length   340 a.a.
NCBI ID   WP_015483198.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2649010..2660032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS13425 (GFX43_013425) ylbP 2649870..2650352 (+) 483 WP_014476736.1 N-acetyltransferase -
  GFX43_RS13430 (GFX43_013430) gerR 2650409..2650990 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  GFX43_RS13435 (GFX43_013435) rpmF 2651136..2651315 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  GFX43_RS13440 (GFX43_013440) ylbN 2651337..2651855 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  GFX43_RS13445 (GFX43_013445) - 2651883..2652068 (+) 186 WP_003232215.1 hypothetical protein -
  GFX43_RS13450 (GFX43_013450) - 2652065..2653297 (+) 1233 WP_015383591.1 nucleotidyltransferase -
  GFX43_RS20855 (GFX43_013455) - 2653370..2653819 (+) 450 WP_015483199.1 hypothetical protein -
  GFX43_RS13460 (GFX43_013460) sepM 2654010..2655032 (-) 1023 WP_015483198.1 protease DdcP Regulator
  GFX43_RS13465 (GFX43_013465) ylbK 2655034..2655816 (-) 783 WP_015383589.1 patatin family protein -
  GFX43_RS13470 (GFX43_013470) spoVV 2655997..2657223 (+) 1227 WP_015383588.1 dipicolinic acid transporter SpoVV -
  GFX43_RS13475 (GFX43_013475) coaD 2657234..2657719 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GFX43_RS13480 (GFX43_013480) rsmD 2657724..2658278 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GFX43_RS13485 (GFX43_013485) ylbG 2658601..2658873 (-) 273 WP_009967171.1 YlbG family protein -
  GFX43_RS13490 (GFX43_013490) ylbF 2658928..2659377 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GFX43_RS13495 (GFX43_013495) ylbE 2659493..2659732 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37551.11 Da        Isoelectric Point: 5.9932

>NTDB_id=352400 GFX43_RS13460 WP_015483198.1 2654010..2655032(-) (sepM) [Bacillus subtilis strain ZD01]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=352400 GFX43_RS13460 WP_015483198.1 2654010..2655032(-) (sepM) [Bacillus subtilis strain ZD01]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGTATTAAGGAGGAAGGCGAGTCAGATAAGGAATATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCACTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTTCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403