Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GFX43_RS13490 Genome accession   NZ_CP046448
Coordinates   2658928..2659377 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain ZD01     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2653928..2664377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS13460 (GFX43_013460) sepM 2654010..2655032 (-) 1023 WP_015483198.1 protease DdcP Regulator
  GFX43_RS13465 (GFX43_013465) ylbK 2655034..2655816 (-) 783 WP_015383589.1 patatin family protein -
  GFX43_RS13470 (GFX43_013470) spoVV 2655997..2657223 (+) 1227 WP_015383588.1 dipicolinic acid transporter SpoVV -
  GFX43_RS13475 (GFX43_013475) coaD 2657234..2657719 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GFX43_RS13480 (GFX43_013480) rsmD 2657724..2658278 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GFX43_RS13485 (GFX43_013485) ylbG 2658601..2658873 (-) 273 WP_009967171.1 YlbG family protein -
  GFX43_RS13490 (GFX43_013490) ylbF 2658928..2659377 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GFX43_RS13495 (GFX43_013495) ylbE 2659493..2659732 (-) 240 WP_003232231.1 YlbE-like family protein -
  GFX43_RS13500 (GFX43_013500) ylbD 2659748..2660146 (-) 399 WP_003232233.1 YlbD family protein -
  GFX43_RS13505 (GFX43_013505) ylbC 2660378..2661418 (-) 1041 WP_015483195.1 CAP domain-containing protein -
  GFX43_RS13510 (GFX43_013510) ylbB 2661502..2661948 (-) 447 WP_003221362.1 CBS domain-containing protein -
  GFX43_RS13515 (GFX43_013515) ylbA 2662088..2662450 (+) 363 WP_015383585.1 YugN family protein -
  GFX43_RS13520 (GFX43_013520) ctaG 2662482..2663375 (-) 894 WP_015483193.1 cytochrome c oxidase assembly factor CtaG -
  GFX43_RS13525 (GFX43_013525) ctaF 2663403..2663735 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  GFX43_RS13530 (GFX43_013530) ctaE 2663738..2664361 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=352401 GFX43_RS13490 WP_003221370.1 2658928..2659377(-) (ylbF) [Bacillus subtilis strain ZD01]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=352401 GFX43_RS13490 WP_003221370.1 2658928..2659377(-) (ylbF) [Bacillus subtilis strain ZD01]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGTGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment