Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   GFX43_RS12690 Genome accession   NZ_CP046448
Coordinates   2501875..2503143 (-) Length   422 a.a.
NCBI ID   WP_080109038.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2496875..2508143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS12685 (GFX43_012685) proS 2500148..2501842 (-) 1695 WP_015383678.1 proline--tRNA ligase -
  GFX43_RS12690 (GFX43_012690) eeP 2501875..2503143 (-) 1269 WP_080109038.1 RIP metalloprotease RseP Regulator
  GFX43_RS12695 (GFX43_012695) dxr 2503150..2504301 (-) 1152 WP_003245155.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  GFX43_RS12700 (GFX43_012700) cdsA 2504363..2505172 (-) 810 WP_003231924.1 phosphatidate cytidylyltransferase -
  GFX43_RS12705 (GFX43_012705) uppS 2505176..2505958 (-) 783 WP_015383676.1 isoprenyl transferase -
  GFX43_RS12710 (GFX43_012710) frr 2506089..2506646 (-) 558 WP_003231927.1 ribosome recycling factor -
  GFX43_RS12715 (GFX43_012715) pyrH 2506648..2507370 (-) 723 WP_003220923.1 UMP kinase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46739.54 Da        Isoelectric Point: 5.0797

>NTDB_id=352394 GFX43_RS12690 WP_080109038.1 2501875..2503143(-) (eeP) [Bacillus subtilis strain ZD01]
MFVNTVIAFIIIFGTLVFFHELGHLLLAQRAGILCREFAIGFGPKIFSFKKNETVYTIRLLPVGGFVRMAGEDPEMIEVK
PGYTVGLLFNKEDQVEKVIINQKEKYPDALVIEVETADLEHDMKITGYEQGKEDELSSFTVSETSFFIVDGEEVQIAPYN
RQFGSKPVWQRIKAIAAGPIMNFILAYVILVMLGLIQGVPSNEPMLGQLTDNGRAAEAGLKEGDYIQSINGEKMRSWPDI
VSAVKENPEKEMDVAVKRDNKTLHISVTPEAVKDENKKTIGRFGSYAPTEKGVLSAVAYGATSTVDVTKAILTNLSKLVT
GQFKLDMLSGPVGIYDMTDQVAKTGIVNLFQFAAFLSINLGIVNLLPIPALDGGRLLFLFIEAIRGKPINREKEAFVVFI
GVAFLMLLMLVVTWNDIQRLFL

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=352394 GFX43_RS12690 WP_080109038.1 2501875..2503143(-) (eeP) [Bacillus subtilis strain ZD01]
ATGTTCGTGAATACAGTTATAGCGTTTATCATTATTTTCGGAACGCTCGTTTTCTTCCATGAACTGGGCCATTTATTGCT
AGCCCAAAGAGCGGGAATTCTCTGCCGTGAATTTGCGATCGGCTTCGGTCCAAAGATTTTTTCTTTCAAAAAAAATGAAA
CAGTTTATACGATCAGGCTGCTTCCGGTCGGCGGATTTGTTCGTATGGCCGGCGAAGATCCGGAAATGATTGAGGTGAAA
CCCGGATACACGGTCGGGCTTCTGTTTAATAAAGAAGATCAAGTTGAGAAAGTCATCATCAATCAAAAGGAAAAATATCC
GGATGCTTTAGTCATTGAAGTGGAAACAGCTGATCTAGAGCATGACATGAAGATCACCGGTTATGAACAGGGGAAAGAGG
ACGAACTTTCCAGCTTTACTGTCAGCGAAACATCCTTTTTTATTGTAGATGGAGAAGAAGTGCAGATTGCGCCGTATAAT
CGCCAATTTGGTTCCAAACCTGTGTGGCAGCGGATTAAAGCAATTGCTGCAGGGCCGATTATGAACTTTATTTTAGCTTA
CGTCATTTTAGTGATGCTTGGGCTGATTCAAGGCGTACCGTCAAATGAACCTATGCTCGGGCAGCTGACAGACAATGGAC
GGGCGGCTGAAGCAGGGCTAAAAGAAGGGGATTATATCCAAAGCATTAACGGAGAGAAAATGAGGTCTTGGCCTGACATT
GTCTCCGCTGTAAAAGAAAACCCGGAGAAAGAAATGGACGTTGCAGTAAAAAGAGATAACAAAACGCTTCATATTTCAGT
GACTCCGGAAGCTGTTAAAGATGAGAACAAAAAAACAATCGGACGTTTCGGTTCCTATGCGCCGACTGAAAAAGGCGTAC
TCTCAGCGGTTGCTTACGGCGCGACATCAACAGTTGATGTTACCAAAGCCATTTTAACCAATCTGAGCAAATTAGTAACA
GGCCAATTTAAACTCGATATGCTGTCAGGTCCTGTCGGCATATATGACATGACAGACCAAGTGGCGAAAACAGGGATCGT
GAACTTATTTCAGTTTGCGGCGTTTTTAAGCATTAACCTTGGGATTGTCAACCTGCTTCCGATTCCGGCACTTGACGGAG
GAAGACTGTTGTTTCTATTTATTGAAGCGATTCGGGGCAAACCGATTAACAGGGAAAAAGAAGCATTTGTTGTGTTTATC
GGAGTAGCTTTTCTAATGCTTCTTATGCTGGTTGTCACATGGAACGATATCCAGCGGCTGTTTTTGTAA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_6)

(212-258)

Peptidase family M50 (Peptidase_M50)

(8-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

39.211

100

0.4
  eeP Streptococcus thermophilus LMG 18311

39.344

100

0.398

Multiple sequence alignment