Detailed information NTG0352305

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: E3Z29_RS23560
• Genome accession: NZ_CP038207
• Coordinates: 5090574..5092787 (-)
• Length: 737 a.a.
• NCBI ID: WP_134787084.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S150
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5085574..5097787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3Z29_RS23525 (E3Z29_23525)	murB	5085944..5086963 (-)	1020	WP_134787080.1	UDP-N-acetylmuramate dehydrogenase	-
E3Z29_RS23530 (E3Z29_23530)	-	5086960..5087424 (-)	465	WP_134787081.1	low molecular weight protein-tyrosine-phosphatase	-
E3Z29_RS23535 (E3Z29_23535)	kdsB	5087424..5088188 (-)	765	WP_134787082.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
E3Z29_RS23540 (E3Z29_23540)	-	5088185..5088370 (-)	186	WP_003174668.1	Trm112 family protein	-
E3Z29_RS23545 (E3Z29_23545)	lpxK	5088392..5089402 (-)	1011	WP_134787083.1	tetraacyldisaccharide 4'-kinase	-
E3Z29_RS23550 (E3Z29_23550)	-	5089402..5089830 (-)	429	WP_097088472.1	biopolymer transporter ExbD	-
E3Z29_RS23555 (E3Z29_23555)	exbB	5089827..5090462 (-)	636	WP_003227083.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
E3Z29_RS23560 (E3Z29_23560)	comA	5090574..5092787 (-)	2214	WP_134787084.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
E3Z29_RS23565 (E3Z29_23565)	-	5092924..5093442 (+)	519	WP_098965042.1	DUF2062 domain-containing protein	-
E3Z29_RS23570 (E3Z29_23570)	-	5093584..5094363 (-)	780	WP_098965044.1	ABC transporter permease	-
E3Z29_RS23575 (E3Z29_23575)	-	5094360..5095292 (-)	933	WP_027612335.1	ABC transporter ATP-binding protein	-
E3Z29_RS23580 (E3Z29_23580)	-	5095426..5096049 (-)	624	WP_134787085.1	glutathione S-transferase family protein	-
E3Z29_RS23585 (E3Z29_23585)	-	5096093..5096752 (-)	660	WP_134787086.1	transglutaminase family protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 81246.66 Da
• Isoelectric Point: 10.5337

>NTDB_id=352305 E3Z29_RS23560 WP_134787084.1 5090574..5092787(-) (comA) [Pseudomonas sp. S150]
MRTGMMALAVGLLVPVFLPVLPPVGLMMLLPLVGLMLLPFRSYPLAFLLFGFTWACVSAQWALNDRLPEALDGETRWVEG
RVVGLPQTSEGVVRFELADARSRHEKLPSLMRLAWYAGPPLNSGERWRLAVKLRRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEANWAWRDSIRQRLMAVDAQGRGGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGMLAAVIYLL
VAGLARYGWWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFDALLLLDPL
ASLRPGLWLSFAAVGILIFTFGGRLGAWKWWQTWTRAQWLIALGLCPVLLALNLPISLSGPLANLLAVPWVSLLVLPPAL
LGTLLLPVPYVGAGLLWLAGGLIDWLFRGLSLIAGAWPAWISPSLPWWVLLLGSLGALLLLLPRGVPLRPLGWPLLLILL
APPRERVADGLADVWQLDVGQGLAILIRTRHHALLYDAGPRFGDFDLGERVVLPALHKLRVERIDLMLLSHADADHAGGA
LAVSRGLKVTRVISGDPPGLPAILRAEACESGRQWQWDGVSFQLWQWSAAHDSNQRSCVLQIEANGERLLLTGDVDTAAE
RVLLESPLALPTHWLQAPHHGSRSSSSMALLRALRPHSVLISRGQGNSFGHPHPLVLARYRQQGLRIYDSAQHGAIQLRL
GSFQAPRLMRQQRRFWR

Nucleotide

• Length: 2214 bp

>NTDB_id=352305 E3Z29_RS23560 WP_134787084.1 5090574..5092787(-) (comA) [Pseudomonas sp. S150]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGTTCCGGTTTTTTTGCCGGTTTTACCGCCGGTCGGGTTGAT
GATGTTGTTGCCGTTGGTGGGACTGATGTTGTTGCCGTTTCGCAGCTATCCCCTGGCGTTTCTGCTATTCGGTTTCACCT
GGGCGTGCGTCAGTGCGCAATGGGCGTTGAATGATCGCCTGCCGGAAGCGCTTGACGGCGAAACCCGTTGGGTCGAAGGG
CGGGTGGTCGGTTTGCCGCAAACCAGCGAGGGCGTGGTGCGGTTCGAGTTGGCCGATGCCCGCTCGCGACACGAAAAATT
GCCGTCGTTGATGCGTCTGGCGTGGTACGCCGGGCCGCCGCTCAACAGCGGTGAGCGCTGGCGGCTGGCGGTGAAGCTCA
GGCGCCCCGGTGGTTTGCTCAATCCCGACGCCTTTGATTACGAAGCCTGGCTGTTGGCGCAACGCATCGGCGCGACCGGC
ACGATCAAGGATGGTCAGCGCCTGGCCGAGGCAAACTGGGCATGGCGCGACAGCATTCGTCAGCGCTTGATGGCAGTCGA
TGCCCAAGGCCGGGGCGGTGCATTGGCGGCGCTGGTGCTCGGCGACGGCTCCGGGCTCAGCCGCGAGGATTGGCAGATCC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGTCAGCACATCGGGATGTTGGCGGCGGTCATCTATCTATTG
GTCGCCGGGCTGGCGCGCTACGGCTGGTGGCCGCTGCGCTGGCCATGGCTGCCATGGGCCTGCGGGCTGGCGTTTGCCGC
GGCGCTCGGTTACGGCTTGCTCGCCGGGTTTGATGTGCCGGTGCAACGGGCCTGCGTGATGGTCGGGCTGGTGTTGTTGT
GGCGCCTGCGCTTTCGCCATCTCGGCGCGTGGTGGCCGCTGTTGCTGGCATTCGATGCGTTGCTGTTGCTCGACCCGTTA
GCCAGTTTGCGTCCGGGTTTGTGGCTGTCGTTCGCCGCGGTGGGGATTTTGATTTTCACCTTCGGCGGGCGACTCGGTGC
GTGGAAATGGTGGCAGACCTGGACCCGCGCGCAATGGCTGATTGCGCTGGGTCTGTGCCCGGTGTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCATTGGCAAATCTGCTCGCGGTGCCATGGGTCAGTCTGCTGGTGCTGCCACCGGCACTG
CTCGGCACGCTGTTGTTGCCGGTGCCTTACGTCGGTGCAGGCTTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TCGCGGCTTGTCGCTGATCGCCGGGGCCTGGCCGGCGTGGATCTCGCCGTCGTTGCCGTGGTGGGTTTTGCTGCTCGGCA
GTCTCGGCGCCTTGCTGTTGCTGTTGCCGCGCGGGGTGCCTTTGCGACCGTTGGGCTGGCCGTTGCTGTTGATTCTGCTG
GCGCCGCCGCGCGAGCGAGTGGCCGATGGACTGGCCGATGTCTGGCAGCTCGATGTCGGTCAGGGCCTGGCGATCCTGAT
CCGCACGCGTCATCACGCGTTGCTCTACGACGCCGGTCCACGCTTTGGCGATTTCGATCTGGGGGAGCGAGTGGTGCTGC
CGGCGCTGCACAAACTGAGGGTCGAGCGCATTGATTTGATGCTGCTCAGTCATGCCGACGCCGACCACGCCGGTGGTGCG
CTGGCAGTATCGCGGGGCTTGAAAGTGACGCGGGTGATCAGCGGCGATCCGCCGGGGCTGCCCGCCATCCTGCGGGCCGA
GGCCTGTGAAAGTGGACGTCAATGGCAGTGGGACGGGGTCAGTTTTCAGCTGTGGCAATGGTCGGCGGCCCATGACAGCA
ATCAGCGCTCCTGTGTGTTGCAGATCGAGGCCAATGGCGAGCGGCTGCTGCTGACCGGCGATGTCGACACGGCTGCCGAA
CGGGTTTTGCTGGAAAGTCCGTTGGCGCTGCCGACGCACTGGCTGCAAGCGCCGCACCATGGCAGCCGCAGTTCCTCTTC
GATGGCTTTGCTGCGGGCATTACGTCCGCATTCGGTGCTGATCTCCCGGGGCCAGGGCAATTCGTTCGGTCATCCGCACC
CGCTGGTGCTCGCGCGTTATCGCCAGCAAGGGCTGCGCATCTACGACAGCGCGCAGCACGGCGCCATTCAACTGCGCCTG
GGCAGCTTTCAGGCACCGAGGCTGATGCGTCAACAACGGCGTTTCTGGCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.117	97.422	0.605
comA	Ralstonia pseudosolanacearum GMI1000	34.483	100	0.366