Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GJV83_RS18885 Genome accession   NZ_CP046416
Coordinates   3879055..3879495 (+) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain LZYWN_4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3874055..3884495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV83_RS18865 (GJV83_18865) aroP 3875053..3876426 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  GJV83_RS18870 (GJV83_18870) ampE 3876469..3877323 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  GJV83_RS18875 (GJV83_18875) ampD 3877320..3877871 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GJV83_RS18880 (GJV83_18880) nadC 3877959..3878852 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GJV83_RS18885 (GJV83_18885) pilA 3879055..3879495 (+) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  GJV83_RS18890 (GJV83_18890) pilB 3879505..3880890 (+) 1386 WP_001025145.1 type II secretion system protein GspE Machinery gene
  GJV83_RS18895 (GJV83_18895) hofC 3880880..3882082 (+) 1203 WP_000157266.1 protein transport protein HofC -
  GJV83_RS18900 (GJV83_18900) guaC 3882117..3883160 (-) 1044 WP_001217338.1 GMP reductase -
  GJV83_RS18905 - 3883316..3883360 (-) 45 WP_120795372.1 protein YacM -
  GJV83_RS18910 (GJV83_18905) coaE 3883385..3884005 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=352286 GJV83_RS18885 WP_000360904.1 3879055..3879495(+) (pilA) [Escherichia coli strain LZYWN_4]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=352286 GJV83_RS18885 WP_000360904.1 3879055..3879495(+) (pilA) [Escherichia coli strain LZYWN_4]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363