Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   E3306_RS04460 Genome accession   NZ_CP038183
Coordinates   933331..934317 (+) Length   328 a.a.
NCBI ID   WP_173950591.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MJ015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 928331..939317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3306_RS04435 (E3306_04640) opp4B 928544..929506 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  E3306_RS04440 (E3306_04645) opp4C 929518..930399 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  E3306_RS04445 (E3306_04650) trpS 930441..931430 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  E3306_RS04450 (E3306_04655) spxA 931725..932120 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  E3306_RS04455 (E3306_04660) mecA 932491..933210 (+) 720 WP_001217728.1 adaptor protein MecA -
  E3306_RS04460 (E3306_04665) coiA 933331..934317 (+) 987 WP_173950591.1 competence protein CoiA Machinery gene
  E3306_RS04465 (E3306_04670) pepF 934365..936173 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  E3306_RS04470 (E3306_04675) yjbH 936633..937439 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  E3306_RS04475 (E3306_04680) - 937462..937827 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  E3306_RS04480 (E3306_04685) - 937931..938524 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  E3306_RS04485 (E3306_04690) - 938710..939057 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38841.40 Da        Isoelectric Point: 9.5840

>NTDB_id=352161 E3306_RS04460 WP_173950591.1 933331..934317(+) (coiA) [Staphylococcus aureus strain MJ015]
MLVALNEEKERVLTTTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQTMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=352161 E3306_RS04460 WP_173950591.1 933331..934317(+) (coiA) [Staphylococcus aureus strain MJ015]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAACAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAACAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

97.866

100

0.979
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment