Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GNT61_RS12160 Genome accession   NZ_CP046405
Coordinates   2562842..2563486 (+) Length   214 a.a.
NCBI ID   WP_179063410.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SE5443     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2557842..2568486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNT61_RS12145 (GNT61_12130) - 2558476..2559690 (+) 1215 WP_096066944.1 MFS transporter -
  GNT61_RS12150 (GNT61_12135) - 2559706..2560734 (-) 1029 WP_003097554.1 AraC family transcriptional regulator -
  GNT61_RS12155 (GNT61_12140) pqsH 2561352..2562500 (+) 1149 WP_003119987.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  GNT61_RS12160 (GNT61_12145) letA 2562842..2563486 (+) 645 WP_179063410.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GNT61_RS12165 (GNT61_12150) uvrC 2563487..2565313 (+) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  GNT61_RS12170 (GNT61_12155) pgsA 2565347..2565907 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23555.48 Da        Isoelectric Point: 5.6845

>NTDB_id=351971 GNT61_RS12160 WP_179063410.1 2562842..2563486(+) (letA) [Pseudomonas aeruginosa strain SE5443]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVCHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=351971 GNT61_RS12160 WP_179063410.1 2562842..2563486(+) (letA) [Pseudomonas aeruginosa strain SE5443]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTATCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCTGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537