Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GNT44_RS12795 Genome accession   NZ_CP046402
Coordinates   2658531..2658896 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain SE5331     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2653531..2663896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNT44_RS12780 (GNT44_12780) pilK 2654875..2655750 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  GNT44_RS12785 (GNT44_12785) pilJ 2655811..2657859 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  GNT44_RS12790 (GNT44_12790) - 2657944..2658480 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  GNT44_RS12795 (GNT44_12795) pilH 2658531..2658896 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  GNT44_RS12800 (GNT44_12800) pilG 2658943..2659350 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  GNT44_RS12805 (GNT44_12805) gshB 2659605..2660558 (+) 954 WP_003100943.1 glutathione synthase -
  GNT44_RS12810 (GNT44_12810) - 2660705..2661598 (+) 894 WP_003084580.1 TonB family protein -
  GNT44_RS12815 (GNT44_12815) - 2661647..2662216 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  GNT44_RS12820 (GNT44_12820) ruvX 2662216..2662650 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  GNT44_RS12825 (GNT44_12825) pyrR 2662762..2663274 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=351658 GNT44_RS12795 WP_003084587.1 2658531..2658896(-) (pilH) [Pseudomonas aeruginosa strain SE5331]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=351658 GNT44_RS12795 WP_003084587.1 2658531..2658896(-) (pilH) [Pseudomonas aeruginosa strain SE5331]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364