Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | E3U44_RS08360 | Genome accession | NZ_CP038033 |
| Coordinates | 1728998..1730077 (-) | Length | 359 a.a. |
| NCBI ID | WP_134357715.1 | Uniprot ID | A0A4P7BWP4 |
| Organism | Nitrosococcus wardiae strain D1FHS | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1723998..1735077
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3U44_RS08335 (E3U44_08335) | - | 1724502..1725560 (+) | 1059 | WP_134357710.1 | hypothetical protein | - |
| E3U44_RS08340 (E3U44_08340) | - | 1725587..1725871 (+) | 285 | WP_166805043.1 | HPr-rel-A system PqqD family peptide chaperone | - |
| E3U44_RS08345 (E3U44_08345) | - | 1725871..1726791 (+) | 921 | WP_134357712.1 | HprK-related kinase A | - |
| E3U44_RS08350 (E3U44_08350) | - | 1726781..1727899 (+) | 1119 | WP_134357713.1 | nucleotidyltransferase family protein | - |
| E3U44_RS08355 (E3U44_08355) | rpoH | 1727917..1728780 (-) | 864 | WP_134357714.1 | RNA polymerase sigma factor RpoH | - |
| E3U44_RS08360 (E3U44_08360) | pilA | 1728998..1730077 (-) | 1080 | WP_134357715.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| E3U44_RS08365 (E3U44_08365) | - | 1730158..1731537 (+) | 1380 | WP_134357716.1 | M16 family metallopeptidase | - |
| E3U44_RS08370 (E3U44_08370) | - | 1731527..1732831 (+) | 1305 | WP_134357717.1 | M16 family metallopeptidase | - |
| E3U44_RS08375 (E3U44_08375) | rsmD | 1732815..1733399 (+) | 585 | WP_134357718.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| E3U44_RS08380 (E3U44_08380) | coaD | 1733427..1733909 (+) | 483 | WP_134357719.1 | pantetheine-phosphate adenylyltransferase | - |
| E3U44_RS08385 (E3U44_08385) | - | 1733947..1734201 (+) | 255 | WP_134357720.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 38587.47 Da Isoelectric Point: 6.5241
>NTDB_id=351657 E3U44_RS08360 WP_134357715.1 1728998..1730077(-) (pilA) [Nitrosococcus wardiae strain D1FHS]
MVSFFKRKGKNPAPDPEMVTPAPETAETPEKANGGTETVKKRRLFKRLRNRLGRTRGNLTGGIADLMLGKKNIDDELLEE
IETQLLVADVGVEATQSIIDNLTVRVSRKQLKDPAALMVALRENMQELLLPSSHPLVIPEGTKPFVILMVGVNGVGKTTT
IGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQAWGERNQVPVIAQRSGADSASVIFDALQSAQARGIDVLVADTAGRLHT
QANLMEELKKVKRVMGKVDPQAPHEIMLTVDAGTGQNALNQAKQFHEAVGLTGITLTKLDGTAKGGVIFAIAKKMALPIR
FIGVGEGIDDLRPFDAEEFVAALLTPTSAEEGEEEIASE
MVSFFKRKGKNPAPDPEMVTPAPETAETPEKANGGTETVKKRRLFKRLRNRLGRTRGNLTGGIADLMLGKKNIDDELLEE
IETQLLVADVGVEATQSIIDNLTVRVSRKQLKDPAALMVALRENMQELLLPSSHPLVIPEGTKPFVILMVGVNGVGKTTT
IGKLAKKFQAEGRSVMLAAGDTFRAAAVEQLQAWGERNQVPVIAQRSGADSASVIFDALQSAQARGIDVLVADTAGRLHT
QANLMEELKKVKRVMGKVDPQAPHEIMLTVDAGTGQNALNQAKQFHEAVGLTGITLTKLDGTAKGGVIFAIAKKMALPIR
FIGVGEGIDDLRPFDAEEFVAALLTPTSAEEGEEEIASE
Nucleotide
Download Length: 1080 bp
>NTDB_id=351657 E3U44_RS08360 WP_134357715.1 1728998..1730077(-) (pilA) [Nitrosococcus wardiae strain D1FHS]
ATGGTAAGTTTCTTTAAGCGAAAGGGAAAGAACCCAGCACCGGATCCAGAAATGGTGACCCCTGCCCCTGAGACGGCTGA
AACCCCGGAAAAAGCTAATGGGGGCACGGAAACCGTGAAAAAGCGGCGGTTGTTCAAACGCCTGCGCAATCGCCTCGGTC
GCACCCGCGGCAACTTGACTGGCGGTATCGCCGACTTGATGCTGGGCAAAAAAAACATTGACGATGAGTTACTGGAAGAG
ATTGAAACCCAATTGCTTGTTGCCGATGTGGGGGTAGAAGCCACCCAATCCATTATTGATAATCTCACCGTGCGAGTCTC
CCGCAAACAACTCAAAGACCCAGCAGCCTTAATGGTAGCCTTAAGGGAGAATATGCAAGAGCTGCTGCTGCCCTCTAGCC
ACCCCCTGGTGATTCCCGAGGGCACCAAACCCTTCGTAATTCTCATGGTGGGCGTCAATGGAGTTGGCAAAACCACCACG
ATCGGTAAACTGGCCAAAAAATTCCAGGCGGAAGGCCGCTCGGTCATGCTAGCTGCAGGCGATACCTTCCGCGCCGCCGC
GGTGGAACAGCTTCAAGCCTGGGGCGAGCGTAACCAGGTGCCTGTAATTGCCCAGCGCAGCGGGGCTGATTCTGCCTCGG
TGATTTTTGATGCCCTACAATCGGCCCAGGCGCGAGGAATCGATGTCCTGGTTGCGGATACTGCAGGCCGCCTGCATACC
CAGGCCAATCTCATGGAAGAACTCAAAAAAGTTAAACGGGTCATGGGGAAAGTAGATCCCCAGGCTCCCCATGAAATAAT
GCTGACCGTGGATGCCGGAACGGGCCAGAATGCCCTCAATCAGGCTAAGCAGTTCCATGAAGCCGTGGGTCTTACGGGGA
TTACCCTCACCAAGTTGGATGGCACCGCTAAAGGGGGGGTCATTTTCGCCATTGCTAAGAAGATGGCGCTCCCTATCCGC
TTTATCGGCGTCGGTGAAGGAATCGACGATCTCCGTCCTTTCGACGCGGAGGAATTCGTGGCGGCCTTACTTACCCCCAC
CTCCGCGGAAGAGGGGGAGGAAGAAATCGCTTCAGAATGA
ATGGTAAGTTTCTTTAAGCGAAAGGGAAAGAACCCAGCACCGGATCCAGAAATGGTGACCCCTGCCCCTGAGACGGCTGA
AACCCCGGAAAAAGCTAATGGGGGCACGGAAACCGTGAAAAAGCGGCGGTTGTTCAAACGCCTGCGCAATCGCCTCGGTC
GCACCCGCGGCAACTTGACTGGCGGTATCGCCGACTTGATGCTGGGCAAAAAAAACATTGACGATGAGTTACTGGAAGAG
ATTGAAACCCAATTGCTTGTTGCCGATGTGGGGGTAGAAGCCACCCAATCCATTATTGATAATCTCACCGTGCGAGTCTC
CCGCAAACAACTCAAAGACCCAGCAGCCTTAATGGTAGCCTTAAGGGAGAATATGCAAGAGCTGCTGCTGCCCTCTAGCC
ACCCCCTGGTGATTCCCGAGGGCACCAAACCCTTCGTAATTCTCATGGTGGGCGTCAATGGAGTTGGCAAAACCACCACG
ATCGGTAAACTGGCCAAAAAATTCCAGGCGGAAGGCCGCTCGGTCATGCTAGCTGCAGGCGATACCTTCCGCGCCGCCGC
GGTGGAACAGCTTCAAGCCTGGGGCGAGCGTAACCAGGTGCCTGTAATTGCCCAGCGCAGCGGGGCTGATTCTGCCTCGG
TGATTTTTGATGCCCTACAATCGGCCCAGGCGCGAGGAATCGATGTCCTGGTTGCGGATACTGCAGGCCGCCTGCATACC
CAGGCCAATCTCATGGAAGAACTCAAAAAAGTTAAACGGGTCATGGGGAAAGTAGATCCCCAGGCTCCCCATGAAATAAT
GCTGACCGTGGATGCCGGAACGGGCCAGAATGCCCTCAATCAGGCTAAGCAGTTCCATGAAGCCGTGGGTCTTACGGGGA
TTACCCTCACCAAGTTGGATGGCACCGCTAAAGGGGGGGTCATTTTCGCCATTGCTAAGAAGATGGCGCTCCCTATCCGC
TTTATCGGCGTCGGTGAAGGAATCGACGATCTCCGTCCTTTCGACGCGGAGGAATTCGTGGCGGCCTTACTTACCCCCAC
CTCCGCGGAAGAGGGGGAGGAAGAAATCGCTTCAGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
58.054 |
83.008 |
0.482 |