Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   E3U39_RS17580 Genome accession   NZ_CP038028
Coordinates   3475217..3475552 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470217..3480552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS17530 (E3U39_17530) comGC 3470408..3470716 (+) 309 WP_079979070.1 competence type IV pilus major pilin ComGC Machinery gene
  E3U39_RS17535 (E3U39_17535) comGD 3470706..3471143 (+) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3U39_RS17540 (E3U39_17540) comGE 3471127..3471441 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  E3U39_RS17545 (E3U39_17545) comGF 3471350..3471850 (+) 501 WP_256052909.1 competence type IV pilus minor pilin ComGF -
  E3U39_RS17550 (E3U39_17550) comGG 3471851..3472228 (+) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  E3U39_RS17555 (E3U39_17555) - 3472285..3472464 (+) 180 WP_003153093.1 YqzE family protein -
  E3U39_RS17560 (E3U39_17560) - 3472504..3472833 (-) 330 WP_039254490.1 DUF3889 domain-containing protein -
  E3U39_RS17565 (E3U39_17565) tapA 3473092..3473763 (+) 672 WP_053573199.1 amyloid fiber anchoring/assembly protein TapA -
  E3U39_RS17570 (E3U39_17570) - 3473735..3474319 (+) 585 WP_015240205.1 signal peptidase I -
  E3U39_RS17575 (E3U39_17575) - 3474384..3475169 (+) 786 WP_007408329.1 TasA family protein -
  E3U39_RS17580 (E3U39_17580) sinR 3475217..3475552 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  E3U39_RS17585 (E3U39_17585) sinI 3475586..3475759 (-) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  E3U39_RS17590 (E3U39_17590) - 3475936..3476730 (-) 795 WP_007408330.1 YqhG family protein -
  E3U39_RS17595 (E3U39_17595) - 3476752..3478422 (-) 1671 WP_031378948.1 SNF2-related protein -
  E3U39_RS17600 (E3U39_17600) gcvT 3478846..3479946 (+) 1101 WP_053573200.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=351624 E3U39_RS17580 WP_003153104.1 3475217..3475552(-) (sinR) [Bacillus amyloliquefaciens strain FS1092]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=351624 E3U39_RS17580 WP_003153104.1 3475217..3475552(-) (sinR) [Bacillus amyloliquefaciens strain FS1092]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment