Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CAP2UW1_RS19475 Genome accession   NC_013194
Coordinates   4486837..4487631 (+) Length   264 a.a.
NCBI ID   WP_015768339.1    Uniprot ID   -
Organism   Candidatus Accumulibacter phosphatis     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4481837..4492631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP2UW1_RS19450 (CAP2UW1_3918) phaR 4482990..4483565 (-) 576 WP_015768334.1 polyhydroxyalkanoate synthesis repressor PhaR -
  CAP2UW1_RS19455 (CAP2UW1_3919) - 4483707..4484450 (-) 744 WP_015768335.1 beta-ketoacyl-ACP reductase -
  CAP2UW1_RS19460 (CAP2UW1_3920) - 4484684..4484899 (+) 216 WP_015768336.1 hypothetical protein -
  CAP2UW1_RS19465 (CAP2UW1_3921) pgeF 4484900..4485730 (-) 831 WP_015768337.1 peptidoglycan editing factor PgeF -
  CAP2UW1_RS19470 (CAP2UW1_3922) rluD 4485708..4486835 (-) 1128 WP_015768338.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CAP2UW1_RS19475 (CAP2UW1_3923) comL 4486837..4487631 (+) 795 WP_015768339.1 outer membrane protein assembly factor BamD Machinery gene
  CAP2UW1_RS19480 (CAP2UW1_3924) - 4487699..4490116 (-) 2418 WP_041567931.1 serine/threonine protein kinase -
  CAP2UW1_RS19485 (CAP2UW1_3925) - 4490221..4491567 (-) 1347 WP_015768341.1 DNA recombination protein RmuC -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30263.39 Da        Isoelectric Point: 7.2338

>NTDB_id=35160 CAP2UW1_RS19475 WP_015768339.1 4486837..4487631(+) (comL) [Candidatus Accumulibacter phosphatis]
MRSLAVIAALIVAALIAGCGLLPAEKDETIGWSANKLYAEAKDALNDGSYAKAIKYFEKLESRYPYGRYAQQAQIEIAYA
YWKDQEPASAVAACDRFIKLHPNHPNVDYVYYLRGLINFNEDLGIMGTISNQDMTERDPKGARESFDAFRELVTRFPDSK
YTPDALLRMKYLVNALASLELHVARYYMKRGAYLAAANRAQYAVKNYPDAPATEEALFIMVKAYDSLGLNDLRDDAERVM
RTNYPNSDYYRRGLDRREPWWKLW

Nucleotide


Download         Length: 795 bp        

>NTDB_id=35160 CAP2UW1_RS19475 WP_015768339.1 4486837..4487631(+) (comL) [Candidatus Accumulibacter phosphatis]
ATGCGTAGTTTAGCGGTTATCGCAGCGCTTATTGTCGCCGCCCTCATTGCCGGCTGCGGTCTTCTGCCGGCGGAGAAGGA
TGAAACCATAGGCTGGTCGGCCAACAAGCTCTACGCCGAAGCCAAGGACGCACTCAACGACGGCTCCTACGCCAAGGCGA
TCAAGTACTTCGAAAAGCTCGAGTCGCGCTATCCCTACGGCCGCTACGCCCAGCAGGCGCAGATCGAGATCGCCTATGCC
TACTGGAAAGATCAGGAACCCGCTTCGGCGGTAGCCGCTTGCGACCGTTTCATCAAGCTGCATCCGAACCACCCGAATGT
GGACTACGTCTATTACCTGCGCGGCCTGATCAACTTCAACGAAGACCTGGGAATCATGGGTACCATCAGCAACCAGGACA
TGACCGAACGCGACCCGAAGGGCGCGCGCGAATCCTTCGACGCGTTCCGGGAGTTGGTGACCCGCTTTCCCGACAGCAAG
TACACGCCCGATGCGCTCCTGCGCATGAAGTATCTGGTCAATGCGCTGGCCTCGCTCGAACTCCACGTCGCCCGCTACTA
CATGAAACGCGGAGCCTACCTTGCCGCCGCCAACCGCGCCCAGTACGCGGTCAAGAACTACCCGGACGCACCGGCTACCG
AAGAAGCGCTGTTCATCATGGTCAAGGCCTACGACTCGCTCGGTCTGAACGATCTGCGCGACGACGCCGAACGGGTCATG
CGCACGAACTATCCGAACAGCGACTACTACCGGCGTGGCCTCGATCGTCGGGAACCGTGGTGGAAGCTCTGGTAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.744

100

0.481
  comL Neisseria gonorrhoeae MS11

47.015

100

0.477

Multiple sequence alignment