Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   E3U39_RS11990 Genome accession   NZ_CP038028
Coordinates   2403520..2404209 (+) Length   229 a.a.
NCBI ID   WP_199910801.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2398520..2409209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS11965 (E3U39_11965) degS 2398804..2399967 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  E3U39_RS11970 (E3U39_11970) degU 2400044..2400733 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  E3U39_RS11975 (E3U39_11975) - 2400831..2401679 (+) 849 WP_053574012.1 DegV family protein -
  E3U39_RS11980 (E3U39_11980) comFA 2401787..2403172 (+) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  E3U39_RS11985 (E3U39_11985) - 2403230..2403514 (+) 285 WP_003151389.1 competence protein ComFB -
  E3U39_RS11990 (E3U39_11990) comFC 2403520..2404209 (+) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  E3U39_RS11995 (E3U39_11995) - 2404283..2404702 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  E3U39_RS12000 (E3U39_12000) flgM 2404772..2405038 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  E3U39_RS12005 (E3U39_12005) - 2405053..2405535 (+) 483 WP_053574009.1 flagellar protein FlgN -
  E3U39_RS12010 (E3U39_12010) flgK 2405551..2407068 (+) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  E3U39_RS12015 (E3U39_12015) flgL 2407080..2407997 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  E3U39_RS12020 (E3U39_12020) - 2408088..2408657 (+) 570 WP_007407476.1 DUF6470 family protein -
  E3U39_RS12025 (E3U39_12025) fliW 2408687..2409118 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25143.74 Da        Isoelectric Point: 8.2927

>NTDB_id=351599 E3U39_RS11990 WP_199910801.1 2403520..2404209(+) (comFC) [Bacillus amyloliquefaciens strain FS1092]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=351599 E3U39_RS11990 WP_199910801.1 2403520..2404209(+) (comFC) [Bacillus amyloliquefaciens strain FS1092]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCTA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment