Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   E3U39_RS11980 Genome accession   NZ_CP038028
Coordinates   2401787..2403172 (+) Length   461 a.a.
NCBI ID   WP_053574011.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2396787..2408172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS11960 (E3U39_11960) - 2397934..2398581 (-) 648 WP_003151384.1 YigZ family protein -
  E3U39_RS11965 (E3U39_11965) degS 2398804..2399967 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  E3U39_RS11970 (E3U39_11970) degU 2400044..2400733 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  E3U39_RS11975 (E3U39_11975) - 2400831..2401679 (+) 849 WP_053574012.1 DegV family protein -
  E3U39_RS11980 (E3U39_11980) comFA 2401787..2403172 (+) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  E3U39_RS11985 (E3U39_11985) - 2403230..2403514 (+) 285 WP_003151389.1 competence protein ComFB -
  E3U39_RS11990 (E3U39_11990) comFC 2403520..2404209 (+) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  E3U39_RS11995 (E3U39_11995) - 2404283..2404702 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  E3U39_RS12000 (E3U39_12000) flgM 2404772..2405038 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  E3U39_RS12005 (E3U39_12005) - 2405053..2405535 (+) 483 WP_053574009.1 flagellar protein FlgN -
  E3U39_RS12010 (E3U39_12010) flgK 2405551..2407068 (+) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  E3U39_RS12015 (E3U39_12015) flgL 2407080..2407997 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52672.14 Da        Isoelectric Point: 10.0979

>NTDB_id=351598 E3U39_RS11980 WP_053574011.1 2401787..2403172(+) (comFA) [Bacillus amyloliquefaciens strain FS1092]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQFDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLFWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGIHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=351598 E3U39_RS11980 WP_053574011.1 2401787..2403172(+) (comFA) [Bacillus amyloliquefaciens strain FS1092]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTTTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTTTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCATTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(325-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment