Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   E3U39_RS11020 Genome accession   NZ_CP038028
Coordinates   2215238..2215357 (-) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2210238..2220357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS10975 (E3U39_10975) speE 2210637..2211467 (+) 831 WP_053573957.1 spermidine synthase -
  E3U39_RS10980 (E3U39_10980) speB 2211526..2212398 (+) 873 WP_007407646.1 agmatinase -
  E3U39_RS10985 (E3U39_10985) - 2212566..2212784 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  E3U39_RS10995 (E3U39_10995) - 2213375..2213887 (-) 513 WP_053573958.1 stage II sporulation protein M -
  E3U39_RS11000 (E3U39_11000) - 2213931..2214212 (-) 282 WP_007407643.1 hypothetical protein -
  E3U39_RS11005 (E3U39_11005) - 2214400..2214585 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  E3U39_RS11010 (E3U39_11010) - 2214620..2214823 (-) 204 WP_007407641.1 hypothetical protein -
  E3U39_RS11015 (E3U39_11015) - 2214837..2215040 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  E3U39_RS11020 (E3U39_11020) phrF 2215238..2215357 (-) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  E3U39_RS11025 (E3U39_11025) rapF 2215341..2216486 (-) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  E3U39_RS11030 (E3U39_11030) - 2216778..2217206 (+) 429 WP_014419128.1 DUF1934 family protein -
  E3U39_RS11035 (E3U39_11035) argS 2217203..2218873 (+) 1671 WP_053573959.1 arginine--tRNA ligase -
  E3U39_RS11040 (E3U39_11040) narK 2219008..2220198 (+) 1191 WP_007407632.1 nitrate transporter NarK -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=351591 E3U39_RS11020 WP_015240778.1 2215238..2215357(-) (phrF) [Bacillus amyloliquefaciens strain FS1092]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=351591 E3U39_RS11020 WP_015240778.1 2215238..2215357(-) (phrF) [Bacillus amyloliquefaciens strain FS1092]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment