Detailed information NTG0351587

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: E3U39_RS09210
• Genome accession: NZ_CP038028
• Coordinates: 1863637..1864749 (-)
• Length: 370 a.a.
• NCBI ID: WP_053573832.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FS1092
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1858637..1869749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3U39_RS09195 (E3U39_09195)	gyrA	1858726..1861185 (-)	2460	WP_004392898.1	DNA gyrase subunit A	-
E3U39_RS09200 (E3U39_09200)	gyrB	1861401..1863317 (-)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
E3U39_RS09205 (E3U39_09205)	-	1863374..1863619 (-)	246	WP_004392908.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
E3U39_RS09210 (E3U39_09210)	recF	1863637..1864749 (-)	1113	WP_053573832.1	DNA replication/repair protein RecF	Machinery gene
E3U39_RS09215 (E3U39_09215)	rlbA	1864765..1864980 (-)	216	WP_004392910.1	ribosome maturation protein RlbA	-
E3U39_RS09220 (E3U39_09220)	dnaN	1865115..1866251 (-)	1137	WP_053573833.1	DNA polymerase III subunit beta	-
E3U39_RS09225 (E3U39_09225)	dnaA	1866436..1867776 (-)	1341	WP_007409908.1	chromosomal replication initiator protein DnaA	-
E3U39_RS09230 (E3U39_09230)	rpmH	1868398..1868532 (+)	135	WP_003178075.1	50S ribosomal protein L34	-
E3U39_RS09235 (E3U39_09235)	rnpA	1868686..1869036 (+)	351	WP_004392944.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=351587 E3U39_RS09210 WP_053573832.1 1863637..1864749(-) (recF) [Bacillus amyloliquefaciens strain FS1092]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKLEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=351587 E3U39_RS09210 WP_053573832.1 1863637..1864749(-) (recF) [Bacillus amyloliquefaciens strain FS1092]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAACTAGAAGGAAGAGTGATGAAGCGAAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTAAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTGTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCTGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.054	100	0.941