Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GNX12_RS09160 Genome accession   NZ_CP046396
Coordinates   1960388..1961815 (-) Length   475 a.a.
NCBI ID   WP_000980611.1    Uniprot ID   -
Organism   Escherichia coli strain ampC_0069     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1955388..1966815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX12_RS09130 (GNX12_09125) yeeZ 1955443..1956267 (+) 825 WP_000754754.1 SDR family oxidoreductase -
  GNX12_RS09135 (GNX12_09130) yeeY 1956313..1957242 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GNX12_RS09140 (GNX12_09135) yoeI 1957457..1957519 (+) 63 WP_010723108.1 membrane protein YoeI -
  GNX12_RS09145 (GNX12_09140) plaP 1957509..1958867 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GNX12_RS09150 (GNX12_09145) tsuA 1959046..1960104 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  GNX12_RS09155 (GNX12_09150) tsuB 1960118..1960345 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GNX12_RS09160 (GNX12_09155) sbcB 1960388..1961815 (-) 1428 WP_000980611.1 exodeoxyribonuclease I Machinery gene
  GNX12_RS09165 (GNX12_09160) dacD 1962004..1963170 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GNX12_RS09170 (GNX12_09165) sbmC 1963289..1963762 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  GNX12_RS09175 (GNX12_09170) yeeA 1963961..1965019 (+) 1059 WP_001200891.1 FUSC family protein -
  GNX12_RS09180 (GNX12_09175) tmaR 1965191..1965520 (+) 330 WP_000450409.1 DUF496 family protein -
  GNX12_RS09185 (GNX12_09180) - 1965621..1965803 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GNX12_RS09190 (GNX12_09185) - 1965857..1966003 (+) 147 Protein_1823 transposase domain-containing protein -
  GNX12_RS09195 (GNX12_09190) - 1966292..1966372 (-) 81 Protein_1824 hypothetical protein -
  GNX12_RS09200 (GNX12_09195) yeeW 1966418..1966612 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=351577 GNX12_RS09160 WP_000980611.1 1960388..1961815(-) (sbcB) [Escherichia coli strain ampC_0069]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=351577 GNX12_RS09160 WP_000980611.1 1960388..1961815(-) (sbcB) [Escherichia coli strain ampC_0069]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585

Multiple sequence alignment