Detailed information NTG0351533

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GL187_RS10845
• Genome accession: NZ_CP046379
• Coordinates: 2121635..2122732 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266669.1
• Uniprot ID: C1CBK4
• Organism: Streptococcus pneumoniae strain 563
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2116635..2127732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GL187_RS10820 (GL187_10960)	pgsA	2117156..2117701 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GL187_RS10825 (GL187_10965)	rodZ	2117712..2118533 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
GL187_RS10830 (GL187_10970)	yfmH	2118575..2119858 (-)	1284	WP_000170215.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GL187_RS10835 (GL187_10975)	yfmF	2119855..2121105 (-)	1251	WP_000424267.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GL187_RS10840 (GL187_10980)	yaaA	2121264..2121632 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
GL187_RS10845 (GL187_10985)	recF	2121635..2122732 (+)	1098	WP_000266669.1	DNA replication/repair protein RecF	Machinery gene
GL187_RS10850 (GL187_10990)	guaB	2122783..2124261 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
GL187_RS10855 (GL187_10995)	trpS	2124413..2125438 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
GL187_RS10860 (GL187_11000)	-	2125644..2127266 (+)	1623	WP_000958769.1	ABC-F family ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41960.00 Da
• Isoelectric Point: 8.6746

>NTDB_id=351533 GL187_RS10845 WP_000266669.1 2121635..2122732(+) (recF) [Streptococcus pneumoniae strain 563]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=351533 GL187_RS10845 WP_000266669.1 2121635..2122732(+) (recF) [Streptococcus pneumoniae strain 563]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: C1CBK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46