Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   E3H47_RS12405 Genome accession   NZ_CP038022
Coordinates   2635525..2636160 (+) Length   211 a.a.
NCBI ID   WP_005018309.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2630525..2641160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS12395 (E3H47_12400) - 2632660..2633469 (-) 810 WP_034669899.1 NAD-dependent epimerase/dehydratase family protein -
  E3H47_RS12400 (E3H47_12405) recG 2633493..2635538 (+) 2046 WP_034682853.1 ATP-dependent DNA helicase RecG -
  E3H47_RS12405 (E3H47_12410) comF 2635525..2636160 (+) 636 WP_005018309.1 ComF family protein Machinery gene
  E3H47_RS12410 (E3H47_12415) - 2636157..2636558 (-) 402 WP_005018308.1 NUDIX domain-containing protein -
  E3H47_RS12415 (E3H47_12420) - 2636568..2637149 (-) 582 WP_005404596.1 TIGR00730 family Rossman fold protein -
  E3H47_RS12420 (E3H47_12425) - 2637314..2638327 (+) 1014 WP_005018301.1 magnesium and cobalt transport protein CorA -
  E3H47_RS12425 (E3H47_12430) - 2638362..2638652 (-) 291 WP_017400885.1 lipid asymmetry maintenance protein MlaB -
  E3H47_RS12430 (E3H47_12435) - 2638676..2639314 (-) 639 WP_005018297.1 phospholipid-binding protein MlaC -
  E3H47_RS12435 (E3H47_12440) - 2639332..2639994 (-) 663 WP_017400884.1 outer membrane lipid asymmetry maintenance protein MlaD -
  E3H47_RS12440 (E3H47_12445) mlaE 2639994..2640770 (-) 777 WP_017400883.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24264.38 Da        Isoelectric Point: 8.8071

>NTDB_id=351512 E3H47_RS12405 WP_005018309.1 2635525..2636160(+) (comF) [Acinetobacter radioresistens strain DD78]
MPMFNPSSLLRPISRLLPCPLCSSSLQMQHGVCHDCWEQLPWYRQTVERQELNIHVACGYQYPIDRIIQQFKYEQQLNYQ
QLLTASILTLRLPKVQAIVPMPISTERLIERGYNQSLVIAKILARELNVPVWQPVIRLAQHSQKGLSRLERLNQIEMQFQ
PILTERRRYRRVLMLDDVVTTGSSLSALAQALTQLGCQHIFAACIAAAETA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=351512 E3H47_RS12405 WP_005018309.1 2635525..2636160(+) (comF) [Acinetobacter radioresistens strain DD78]
ATGCCTATGTTTAACCCATCCTCTTTACTCAGACCTATCTCACGGCTGCTACCCTGCCCGCTTTGTAGCAGCAGTTTACA
AATGCAGCATGGAGTTTGTCATGATTGCTGGGAACAGCTGCCTTGGTATCGGCAGACTGTAGAACGACAAGAATTAAACA
TTCATGTTGCCTGTGGCTATCAGTATCCAATAGATCGCATCATCCAGCAGTTTAAATATGAGCAGCAGTTAAACTATCAG
CAGCTACTGACTGCATCGATACTAACCCTCAGGTTACCTAAAGTTCAGGCCATTGTGCCTATGCCCATATCAACCGAACG
TTTAATTGAACGCGGCTATAATCAGTCACTGGTCATTGCAAAAATTCTAGCCCGTGAGCTGAATGTTCCGGTCTGGCAAC
CTGTAATTCGGCTGGCTCAGCATTCGCAAAAAGGCTTATCGCGACTCGAACGTCTGAACCAGATTGAAATGCAATTTCAG
CCGATCCTCACCGAACGCCGGCGTTACCGCCGGGTATTAATGCTAGACGATGTAGTGACTACAGGCAGCTCACTTTCGGC
CTTGGCTCAAGCCCTGACCCAGCTGGGCTGCCAGCATATTTTTGCTGCGTGTATTGCAGCCGCAGAAACAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.872

100

0.569
  comF Acinetobacter baumannii D1279779

56.872

100

0.569

Multiple sequence alignment