Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   E3H47_RS05765 Genome accession   NZ_CP038022
Coordinates   1223455..1223841 (+) Length   128 a.a.
NCBI ID   WP_005025576.1    Uniprot ID   A0A062BTN5
Organism   Acinetobacter radioresistens strain DD78     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1218455..1228841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS05735 (E3H47_05735) kdsB 1219300..1220061 (+) 762 WP_005025565.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E3H47_RS05740 (E3H47_05740) - 1220079..1221062 (+) 984 WP_005025569.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  E3H47_RS05745 (E3H47_05745) - 1221081..1221422 (+) 342 WP_005014707.1 PilZ domain-containing protein -
  E3H47_RS05750 (E3H47_05750) - 1221466..1222239 (+) 774 WP_005025571.1 TatD family hydrolase -
  E3H47_RS05755 (E3H47_05755) - 1222279..1222887 (+) 609 WP_005025573.1 TetR/AcrR family transcriptional regulator -
  E3H47_RS05760 (E3H47_05760) - 1222902..1223465 (+) 564 WP_005025574.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  E3H47_RS05765 (E3H47_05765) xcpV 1223455..1223841 (+) 387 WP_005025576.1 type II secretion system minor pseudopilin GspI Machinery gene
  E3H47_RS05770 (E3H47_05770) xcpW 1223838..1224473 (+) 636 WP_005025578.1 type II secretion system minor pseudopilin GspJ Machinery gene
  E3H47_RS05775 (E3H47_05775) gspK 1224496..1225440 (+) 945 WP_005025579.1 type II secretion system minor pseudopilin GspK -
  E3H47_RS05780 (E3H47_05780) - 1225537..1226133 (+) 597 WP_005025581.1 6-carboxytetrahydropterin synthase -
  E3H47_RS05785 (E3H47_05785) ung 1226178..1226891 (+) 714 WP_005025584.1 uracil-DNA glycosylase -
  E3H47_RS05790 (E3H47_05790) - 1226888..1228012 (+) 1125 WP_005014691.1 enoyl-CoA hydratase/isomerase family protein -
  E3H47_RS05795 (E3H47_05795) tadA 1228016..1228507 (+) 492 WP_075039964.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14078.22 Da        Isoelectric Point: 7.0119

>NTDB_id=351500 E3H47_RS05765 WP_005025576.1 1223455..1223841(+) (xcpV) [Acinetobacter radioresistens strain DD78]
MKPKGFTLLEVMVALAIFATAAVALTKVAMQYTQATSNAILRTKAQFVGMNEIALMEMNQAWLQGTESKQVTSQGETWQI
DKQAASTISPNVQRIEVQISLFNTEQGKVENGIATLVFFNHPLKENTS

Nucleotide


Download         Length: 387 bp        

>NTDB_id=351500 E3H47_RS05765 WP_005025576.1 1223455..1223841(+) (xcpV) [Acinetobacter radioresistens strain DD78]
GTGAAACCTAAAGGCTTTACATTACTTGAAGTTATGGTTGCGCTAGCAATTTTTGCGACAGCAGCAGTTGCCCTGACAAA
AGTAGCCATGCAATATACACAAGCCACCTCAAATGCAATTTTAAGGACAAAAGCGCAATTTGTAGGTATGAATGAAATTG
CTCTCATGGAAATGAATCAGGCGTGGTTACAGGGAACAGAGTCTAAACAGGTAACATCTCAAGGTGAAACCTGGCAAATT
GACAAACAGGCAGCTTCCACCATCAGTCCAAATGTACAGCGTATTGAAGTACAAATTAGTCTGTTTAATACAGAGCAGGG
TAAGGTTGAAAATGGAATTGCGACCTTGGTGTTTTTTAATCATCCACTCAAAGAAAATACTTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BTN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.032

96.875

0.766

Multiple sequence alignment