Detailed information NTG0351501

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: E3H47_RS05770
• Genome accession: NZ_CP038022
• Coordinates: 1223838..1224473 (+)
• Length: 211 a.a.
• NCBI ID: WP_005025578.1
• Uniprot ID: A0A062BXX8
• Organism: Acinetobacter radioresistens strain DD78
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1218838..1229473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3H47_RS05735 (E3H47_05735)	kdsB	1219300..1220061 (+)	762	WP_005025565.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
E3H47_RS05740 (E3H47_05740)	-	1220079..1221062 (+)	984	WP_005025569.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
E3H47_RS05745 (E3H47_05745)	-	1221081..1221422 (+)	342	WP_005014707.1	PilZ domain-containing protein	-
E3H47_RS05750 (E3H47_05750)	-	1221466..1222239 (+)	774	WP_005025571.1	TatD family hydrolase	-
E3H47_RS05755 (E3H47_05755)	-	1222279..1222887 (+)	609	WP_005025573.1	TetR/AcrR family transcriptional regulator	-
E3H47_RS05760 (E3H47_05760)	-	1222902..1223465 (+)	564	WP_005025574.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E3H47_RS05765 (E3H47_05765)	xcpV	1223455..1223841 (+)	387	WP_005025576.1	type II secretion system minor pseudopilin GspI	Machinery gene
E3H47_RS05770 (E3H47_05770)	xcpW	1223838..1224473 (+)	636	WP_005025578.1	type II secretion system minor pseudopilin GspJ	Machinery gene
E3H47_RS05775 (E3H47_05775)	gspK	1224496..1225440 (+)	945	WP_005025579.1	type II secretion system minor pseudopilin GspK	-
E3H47_RS05780 (E3H47_05780)	-	1225537..1226133 (+)	597	WP_005025581.1	6-carboxytetrahydropterin synthase	-
E3H47_RS05785 (E3H47_05785)	ung	1226178..1226891 (+)	714	WP_005025584.1	uracil-DNA glycosylase	-
E3H47_RS05790 (E3H47_05790)	-	1226888..1228012 (+)	1125	WP_005014691.1	enoyl-CoA hydratase/isomerase family protein	-
E3H47_RS05795 (E3H47_05795)	tadA	1228016..1228507 (+)	492	WP_075039964.1	tRNA adenosine(34) deaminase TadA	-
E3H47_RS05800 (E3H47_05800)	-	1228590..1229024 (+)	435	WP_005014689.1	SRPBCC family protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 24116.49 Da
• Isoelectric Point: 5.3446

>NTDB_id=351501 E3H47_RS05770 WP_005025578.1 1223838..1224473(+) (xcpW) [Acinetobacter radioresistens strain DD78]
MKYKWGFTLVELLVAIAIFAALSALGWKVFDYLIKVKERNSIHEQNLARLQEAYQQILRDSLQLIPLTANNGGELRPALE
LNDQHFIFSKAGVTDPLGQGLGPYERIEYQYSSADQKLYRLKYQNLNTSTAIQPQSSVLLDQVEQYRISVLNPAELNRWP
EGVLDPASQSEQLKILPRGFKINLTINGTEYEWIYSLLNTDDLKEKTINPS

Nucleotide

• Length: 636 bp

>NTDB_id=351501 E3H47_RS05770 WP_005025578.1 1223838..1224473(+) (xcpW) [Acinetobacter radioresistens strain DD78]
ATGAAATATAAATGGGGTTTTACTCTTGTGGAGCTGTTGGTCGCAATTGCGATTTTTGCAGCACTCTCTGCGCTGGGTTG
GAAGGTTTTTGATTATCTGATCAAAGTAAAAGAACGAAATAGTATACATGAGCAAAATCTTGCCCGGTTACAGGAAGCTT
ATCAGCAAATCTTACGTGACAGCCTGCAACTGATTCCATTAACTGCAAATAATGGAGGAGAGTTGCGTCCTGCACTTGAA
TTAAACGATCAGCATTTTATTTTTAGTAAAGCTGGTGTAACTGATCCTTTGGGCCAAGGGCTGGGGCCTTATGAGCGGAT
CGAATATCAATACAGTAGTGCAGACCAGAAACTGTACCGGTTAAAATATCAAAACCTGAATACTTCAACTGCTATTCAGC
CCCAGTCAAGTGTGCTTCTTGATCAGGTCGAGCAATACCGGATTAGCGTCTTAAATCCGGCTGAACTGAACAGATGGCCT
GAAGGCGTATTAGATCCTGCTTCCCAATCAGAACAGCTTAAAATTCTACCGCGCGGTTTTAAAATCAATCTGACCATAAA
TGGAACTGAATACGAATGGATTTACAGCCTTTTAAATACAGATGATTTAAAAGAAAAAACAATAAATCCATCTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (59-190)

• Prokaryotic N-terminal methylation motif (N_methyl) (6-25)

3D structure

• AlphaFold DB: A0A062BXX8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	65.657	93.839	0.616