Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   E3H47_RS00980 Genome accession   NZ_CP038022
Coordinates   208368..208694 (+) Length   108 a.a.
NCBI ID   WP_005017085.1    Uniprot ID   A0A062BQE3
Organism   Acinetobacter radioresistens strain DD78     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 203368..213694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS00955 (E3H47_00955) hemC 203998..204918 (+) 921 WP_026444029.1 hydroxymethylbilane synthase -
  E3H47_RS00960 (E3H47_00960) - 204924..205706 (+) 783 WP_005023000.1 uroporphyrinogen-III synthase -
  E3H47_RS00965 (E3H47_00965) - 205703..206551 (+) 849 WP_005023002.1 hypothetical protein -
  E3H47_RS00970 (E3H47_00970) - 206561..207754 (+) 1194 WP_106439037.1 hypothetical protein -
  E3H47_RS00975 (E3H47_00975) - 207764..208201 (+) 438 WP_005023004.1 thioesterase family protein -
  E3H47_RS00980 (E3H47_00980) hns 208368..208694 (+) 327 WP_005017085.1 H-NS family nucleoid-associated regulatory protein Regulator
  E3H47_RS00985 (E3H47_00985) gspN 208860..209603 (+) 744 WP_138000419.1 type II secretion system protein N -
  E3H47_RS00990 (E3H47_00990) - 209603..210445 (+) 843 WP_005023006.1 type II secretion system protein N -
  E3H47_RS00995 (E3H47_00995) gspD 210487..212742 (+) 2256 WP_138000420.1 type II secretion system secretin GspD -
  E3H47_RS01000 (E3H47_01000) - 212808..213467 (+) 660 WP_005023009.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12369.08 Da        Isoelectric Point: 4.8451

>NTDB_id=351487 E3H47_RS00980 WP_005017085.1 208368..208694(+) (hns) [Acinetobacter radioresistens strain DD78]
MKPDISELSVEDLKRLQLEAEALIASKKDQAVDEAYEQVLEIAENVGLTIEQLLEFGAQKRKKTTRKSVEPRYRNTENPE
ETWTGRGKQPRWLVAALEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=351487 E3H47_RS00980 WP_005017085.1 208368..208694(+) (hns) [Acinetobacter radioresistens strain DD78]
ATGAAGCCAGATATTAGTGAACTTTCGGTAGAAGATCTCAAAAGATTACAGCTTGAAGCCGAAGCATTAATCGCCAGCAA
AAAAGATCAAGCAGTAGATGAAGCTTATGAACAGGTTTTAGAAATTGCTGAAAATGTGGGTCTGACTATTGAACAGTTGC
TAGAATTTGGAGCGCAAAAGCGCAAGAAAACAACACGTAAATCAGTAGAGCCACGTTATCGTAATACTGAAAATCCTGAA
GAAACTTGGACAGGACGTGGTAAGCAGCCACGCTGGTTAGTAGCAGCTCTTGAAAAAGGTGCAAAACTTGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BQE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment