Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   E3H47_RS00830 Genome accession   NZ_CP038022
Coordinates   177121..178686 (-) Length   521 a.a.
NCBI ID   WP_005022968.1    Uniprot ID   A0A062BVU6
Organism   Acinetobacter radioresistens strain DD78     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 172121..183686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS00815 (E3H47_00815) gpmI 172923..174473 (+) 1551 WP_005022960.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  E3H47_RS00820 (E3H47_00820) - 174493..175680 (+) 1188 WP_005022963.1 S41 family peptidase -
  E3H47_RS00825 (E3H47_00825) pilR 175681..177096 (-) 1416 WP_005405846.1 sigma-54 dependent transcriptional regulator Regulator
  E3H47_RS00830 (E3H47_00830) pilS 177121..178686 (-) 1566 WP_005022968.1 PAS domain-containing sensor histidine kinase Regulator
  E3H47_RS00835 (E3H47_00835) - 178701..179336 (-) 636 WP_005017150.1 response regulator -
  E3H47_RS00840 (E3H47_00840) pbpG 179555..180586 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  E3H47_RS00845 (E3H47_00845) thrC 180674..181819 (-) 1146 WP_005017146.1 threonine synthase -
  E3H47_RS00850 (E3H47_00850) - 181877..183181 (-) 1305 WP_005022971.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59315.15 Da        Isoelectric Point: 5.8116

>NTDB_id=351485 E3H47_RS00830 WP_005022968.1 177121..178686(-) (pilS) [Acinetobacter radioresistens strain DD78]
MAPLRPASLLQTIYRLGEWYSAYRLVLALSLNIIFALTLETVAQDYQHPDLYFYSIVGYALISCIQLIFYKILPFEISKQ
LILLFIVDVCCFSLLNFALGGPNLHLSLLFVVTVFAATILLRPQLALIITLVAVISVIYQQVVGSFFNSSHLNSISNSAL
LAFLFFVMYGIGQIAVQRFRLLENLNFYQSIELNQLQNINRAILEQIEVGYLVLDEQQQVILNNPAACSLLGIPPIFTDE
KYFLRKLQPDLYTLIRFSDLKDGERFLFESQLSPYSVDIQVQKLLVPHQALTLLILQDAQKIKQQVQQLKLMALGQLSAS
IAHEIRNPLAAIVQANELLADSQPEQLQMLTSMIDRQSQRIDKIIHDTLNMARNSPTEPAKIRLSGFLAQVLNEDLIDIK
QAVQLQIEQDIWIYFDELQLRQVLINLIRNALRHNSAEQSFIIIRVHGTEERGWIDVIDFGQGVAERDISQLFKPFFSTE
INGTGLGLYLSHSFCEANHAKLTYVKQQQGACFRIECSIIY

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=351485 E3H47_RS00830 WP_005022968.1 177121..178686(-) (pilS) [Acinetobacter radioresistens strain DD78]
ATGGCCCCTCTACGCCCCGCCTCACTGCTTCAGACCATCTACCGTCTGGGAGAGTGGTACAGTGCTTATCGTCTTGTTCT
AGCACTTAGTCTTAATATTATTTTTGCACTAACCCTTGAGACTGTTGCTCAAGACTACCAGCATCCTGACCTGTACTTTT
ATAGTATTGTCGGTTATGCCCTGATCAGCTGTATCCAGCTGATTTTTTATAAAATTCTACCTTTTGAAATTTCGAAGCAG
CTTATTTTACTGTTTATAGTAGATGTATGCTGTTTTAGCCTGCTAAATTTTGCACTGGGTGGACCCAATCTGCACTTAAG
TCTACTTTTTGTGGTGACGGTCTTTGCCGCAACAATTTTACTCAGGCCCCAGCTTGCTTTAATTATCACACTGGTCGCTG
TAATTAGTGTGATTTACCAGCAGGTAGTAGGAAGTTTTTTTAACAGCTCCCATCTCAACAGTATCAGTAATAGTGCTTTA
TTAGCTTTTTTATTTTTTGTGATGTATGGCATTGGACAGATTGCTGTACAGCGGTTTCGCCTTTTGGAAAACCTGAATTT
TTATCAGTCCATTGAGCTTAACCAGCTACAGAATATTAACCGGGCTATTTTGGAGCAAATTGAGGTAGGCTATTTAGTTT
TAGATGAGCAGCAGCAGGTGATTTTAAATAATCCGGCAGCCTGTTCATTACTAGGTATTCCACCGATTTTTACTGATGAA
AAGTATTTTCTACGTAAACTCCAGCCAGACCTGTATACGCTTATCCGGTTTAGTGACTTAAAAGATGGTGAAAGATTCTT
GTTTGAATCGCAGCTTTCACCTTACAGTGTCGATATACAGGTTCAGAAACTTCTTGTGCCTCATCAAGCTTTAACCTTGT
TGATATTGCAGGATGCCCAGAAAATCAAGCAGCAGGTACAACAATTAAAACTGATGGCACTGGGACAGCTTTCGGCCAGT
ATTGCCCATGAAATTCGTAATCCTTTGGCAGCTATTGTTCAGGCTAATGAATTATTAGCTGACAGCCAGCCAGAACAGTT
GCAGATGCTCACTAGCATGATTGACCGGCAGTCACAACGTATTGACAAGATTATCCATGATACCTTGAATATGGCACGTA
ACAGTCCGACTGAGCCTGCTAAAATCAGGTTATCAGGTTTTCTTGCCCAAGTTTTAAATGAAGACCTGATCGATATAAAA
CAGGCTGTACAGCTACAGATTGAGCAGGATATCTGGATTTATTTTGATGAGCTCCAGCTACGTCAAGTGCTTATTAATCT
GATCCGTAATGCATTAAGGCATAATTCAGCAGAGCAGTCTTTTATAATTATACGGGTACATGGCACAGAAGAACGCGGCT
GGATTGATGTCATTGATTTTGGTCAAGGCGTAGCAGAGCGCGATATTTCACAATTGTTTAAACCCTTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTATATTTATCTCACAGTTTTTGTGAGGCTAATCATGCAAAACTTACTTATGTCAAGCA
ACAACAAGGCGCATGTTTTCGAATCGAATGCTCCATTATTTATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BVU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

63.178

99.04

0.626

Multiple sequence alignment