Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   E3H47_RS00825 Genome accession   NZ_CP038022
Coordinates   175681..177096 (-) Length   471 a.a.
NCBI ID   WP_005405846.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 170681..182096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS00810 (E3H47_00810) lptG 171734..172804 (+) 1071 WP_005022957.1 LPS export ABC transporter permease LptG -
  E3H47_RS00815 (E3H47_00815) gpmI 172923..174473 (+) 1551 WP_005022960.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  E3H47_RS00820 (E3H47_00820) - 174493..175680 (+) 1188 WP_005022963.1 S41 family peptidase -
  E3H47_RS00825 (E3H47_00825) pilR 175681..177096 (-) 1416 WP_005405846.1 sigma-54 dependent transcriptional regulator Regulator
  E3H47_RS00830 (E3H47_00830) pilS 177121..178686 (-) 1566 WP_005022968.1 PAS domain-containing sensor histidine kinase Regulator
  E3H47_RS00835 (E3H47_00835) - 178701..179336 (-) 636 WP_005017150.1 response regulator -
  E3H47_RS00840 (E3H47_00840) pbpG 179555..180586 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  E3H47_RS00845 (E3H47_00845) thrC 180674..181819 (-) 1146 WP_005017146.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52975.00 Da        Isoelectric Point: 6.1946

>NTDB_id=351484 E3H47_RS00825 WP_005405846.1 175681..177096(-) (pilR) [Acinetobacter radioresistens strain DD78]
MTNQQALILLVDDEEDLCTLMQMSLAKINIRTHIAHGLEQAKKLFQQHAYDACLTDLNLPDGNGLELVQYVSQLYPCTPI
AVLTAYGNMEIAISALKAGAFDFVSKPVNQAHLQQLVQKALNTPQSAQQLVQDALENRMLIGTSLPIQQLKIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSDGPFIAINCGAIPGDLMESELFGHKKGSFTGASQDKQGLIYSAHGGSLFLDE
IAELPLAMQVKLLRAVQEKKIRPIGSDQEIDVDFRVISASHQDLEILVQQGKFRQDLFFRIHVMDIVLPPLREREDDILL
LAKHFIQEVCKEWDIPNKILTERGQQFLMQQYFPGNVRELRNIIERAITLSDNEYIDLPQLQSAPLRNVQNFVAGQINHE
PLTDQVIPLSPHRKIPAEGLEQYLENIEKEVLLTALNQTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=351484 E3H47_RS00825 WP_005405846.1 175681..177096(-) (pilR) [Acinetobacter radioresistens strain DD78]
ATGACAAATCAGCAGGCACTTATATTATTGGTCGATGATGAGGAGGACCTTTGTACTTTAATGCAAATGTCTTTGGCCAA
AATCAATATCAGAACCCACATTGCACATGGACTGGAGCAGGCAAAAAAACTTTTTCAGCAACATGCTTATGATGCCTGCC
TGACTGATCTGAATTTGCCAGATGGCAATGGGCTGGAATTAGTCCAGTATGTTTCACAACTTTATCCTTGTACACCGATC
GCCGTTTTGACCGCCTATGGCAATATGGAAATTGCTATTTCAGCACTCAAGGCTGGCGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAGGCCCATCTACAGCAACTGGTTCAAAAAGCACTCAATACGCCTCAATCGGCTCAGCAACTGGTTCAAGATG
CTTTGGAAAATCGGATGTTGATTGGCACTTCTTTGCCAATCCAGCAGCTCAAAATTGCCTTGAAAAAAATTGCCCGCTCA
CAGGCACCTGTTTTTATTACTGGTGAATCCGGTACAGGCAAGGAAGTAGTGGCTAATCTGGTACATCGCTTAAGTAACCG
CAGTGATGGTCCATTTATTGCTATTAACTGTGGCGCTATTCCAGGTGATCTCATGGAAAGTGAGCTGTTTGGACACAAAA
AAGGAAGTTTTACCGGCGCAAGTCAGGACAAACAGGGACTAATTTATTCTGCCCATGGTGGTAGCTTGTTTCTGGATGAA
ATTGCTGAACTGCCTCTGGCCATGCAGGTTAAATTACTCCGTGCCGTACAGGAAAAGAAAATCCGTCCGATTGGTAGTGA
TCAGGAAATTGATGTCGATTTTCGTGTAATTAGTGCCAGTCATCAGGACCTGGAAATACTGGTACAGCAAGGTAAGTTCC
GGCAGGATCTCTTCTTTCGGATTCATGTCATGGATATTGTTCTGCCTCCCCTACGTGAACGTGAAGATGACATTCTTCTG
CTGGCTAAACATTTTATTCAGGAAGTATGTAAGGAGTGGGATATTCCCAATAAAATTCTGACCGAGCGCGGCCAGCAATT
TCTGATGCAGCAATATTTTCCGGGGAATGTGCGTGAACTGCGTAATATTATCGAACGTGCGATCACATTAAGTGATAATG
AATATATTGATTTACCCCAACTACAAAGTGCACCTTTGCGCAATGTCCAAAATTTTGTAGCAGGCCAAATTAATCATGAA
CCGCTAACGGACCAAGTCATTCCATTGAGCCCTCACAGGAAAATTCCTGCCGAAGGCCTGGAGCAATATCTGGAAAATAT
TGAAAAAGAAGTTCTGCTCACTGCACTGAACCAGACACACTGGAACCGGACTTTGGCTGCTAAAAAACTTGGAATGAGTT
TTCGCTCTTTACGTTATCGACTTAAAAAATTTGGGCTGGATACCGATGATGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.788

100

0.749
  pilR Pseudomonas aeruginosa PAK

48.401

99.575

0.482

Multiple sequence alignment