Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CAP2UW1_RS03855 Genome accession   NC_013194
Coordinates   888593..889963 (+) Length   456 a.a.
NCBI ID   WP_015765361.1    Uniprot ID   -
Organism   Candidatus Accumulibacter phosphatis     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 883593..894963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP2UW1_RS03825 (CAP2UW1_0763) rpmA 884771..885037 (-) 267 WP_015765356.1 50S ribosomal protein L27 -
  CAP2UW1_RS03830 (CAP2UW1_0764) rplU 885057..885392 (-) 336 WP_015765357.1 50S ribosomal protein L21 -
  CAP2UW1_RS03835 (CAP2UW1_0765) - 885562..886524 (+) 963 WP_015765358.1 polyprenyl synthetase family protein -
  CAP2UW1_RS03845 (CAP2UW1_0766) - 886770..887003 (+) 234 WP_015765359.1 PP0621 family protein -
  CAP2UW1_RS03850 (CAP2UW1_0767) - 887010..888602 (+) 1593 WP_015765360.1 two-component system sensor histidine kinase NtrB -
  CAP2UW1_RS03855 (CAP2UW1_0768) pilR 888593..889963 (+) 1371 WP_015765361.1 sigma-54-dependent transcriptional regulator Regulator
  CAP2UW1_RS03860 (CAP2UW1_0769) ampD 889990..890547 (+) 558 WP_041568110.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CAP2UW1_RS03865 (CAP2UW1_0770) - 890656..891816 (-) 1161 WP_015765363.1 pyridoxal phosphate-dependent aminotransferase -
  CAP2UW1_RS03870 (CAP2UW1_0771) - 891922..893760 (-) 1839 WP_015765364.1 phosphoenolpyruvate carboxykinase (GTP) -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49780.15 Da        Isoelectric Point: 5.6320

>NTDB_id=35146 CAP2UW1_RS03855 WP_015765361.1 888593..889963(+) (pilR) [Candidatus Accumulibacter phosphatis]
MSLGKAERRPRGELARVLVVDDEADIRELLDLTVARMGLSADCAATVAQARQLLEQHRYQLCLTDMRLPDGEGLEIVRLI
GERYGETPVAVITAFGSAQNAVAALKAGAFDYLAKPVALDQLRSLIKSALSLPTRSGSSEAGQPSGAAAQLIGESMAIAQ
VRQMIEKLARSQAPLYVSGESGTGKELAARLIHDHSARRTAPFVPVNCGAIPENLMESEFFGYRKGAFTGADSDRAGFFQ
AATGGTLFLDEVADLPLLMQVKLLRAIQEKKVRKVGSTVEEAVDVRIISATHRMLKDCVDAGSFRQDLYYRLNVIELRMP
PLRERQEDVEPLVAALLVRICGAQPPRVEAAAMRALKAYSFPGNVRELENVLERATALCSNDTVLIDDLQLAPVMAVSDS
VGRDGETLDDYINRVEKQAIVEALTKTDFNRTAAARLLGVTFRSLRYRIERLGIEE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=35146 CAP2UW1_RS03855 WP_015765361.1 888593..889963(+) (pilR) [Candidatus Accumulibacter phosphatis]
ATGTCACTAGGCAAGGCGGAGCGGCGCCCGCGCGGCGAGTTGGCAAGAGTGCTGGTGGTCGACGACGAGGCGGATATCCG
CGAACTGCTCGACCTGACCGTGGCTCGTATGGGCCTTTCGGCCGACTGCGCGGCAACTGTGGCGCAGGCGCGGCAGCTGC
TCGAACAGCACCGCTATCAGCTGTGCCTTACCGATATGCGATTGCCCGACGGGGAGGGATTGGAGATCGTACGGCTGATC
GGTGAGCGCTACGGCGAGACACCGGTGGCGGTGATAACGGCTTTCGGCAGCGCTCAGAACGCCGTCGCCGCGCTCAAGGC
AGGAGCCTTTGACTATCTCGCGAAGCCGGTTGCGCTCGATCAATTGCGCAGCCTGATCAAGTCGGCGCTCAGTCTTCCCA
CAAGGAGTGGATCCAGCGAAGCCGGGCAGCCGTCGGGCGCTGCGGCGCAACTGATCGGCGAGTCGATGGCGATTGCCCAG
GTGCGCCAGATGATCGAGAAGCTGGCACGCAGCCAGGCGCCGCTGTATGTCTCCGGCGAGTCGGGCACCGGCAAGGAACT
CGCGGCACGCCTGATCCACGACCACAGCGCGCGCCGCACCGCGCCGTTCGTTCCGGTCAACTGCGGGGCGATTCCCGAGA
ACCTGATGGAAAGCGAGTTCTTCGGCTATCGCAAGGGCGCATTCACCGGCGCCGACAGCGACCGCGCCGGTTTCTTCCAG
GCGGCCACCGGTGGGACACTGTTTCTGGACGAGGTTGCCGATCTGCCGCTGTTGATGCAGGTCAAGCTCCTGCGTGCCAT
CCAGGAGAAGAAAGTGCGCAAGGTGGGCAGCACTGTCGAGGAGGCGGTCGATGTGCGCATCATCTCGGCGACCCACCGAA
TGCTCAAGGACTGTGTTGACGCCGGATCGTTTCGTCAGGATCTCTATTACCGTCTGAACGTCATCGAACTCAGGATGCCG
CCCCTGCGCGAGCGTCAGGAAGATGTCGAGCCCCTGGTCGCGGCGCTGCTGGTGCGCATCTGCGGAGCGCAGCCGCCGCG
CGTCGAGGCGGCAGCCATGCGCGCGCTGAAGGCGTACAGCTTTCCCGGGAATGTCCGGGAACTGGAGAATGTCCTCGAGC
GGGCTACCGCCTTGTGCAGCAACGACACGGTGCTGATCGACGATCTGCAACTGGCTCCGGTCATGGCGGTGAGTGACAGC
GTGGGCAGGGATGGCGAAACTCTGGACGACTACATCAACCGTGTCGAGAAGCAGGCAATCGTCGAAGCCTTGACGAAGAC
CGACTTCAACCGGACGGCGGCTGCCAGACTGCTCGGCGTGACCTTTCGCTCGCTGCGCTATCGTATCGAACGGCTGGGCA
TCGAAGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(151-317)

Response regulator receiver domain (Response_reg)

(17-126)

Bacterial regulatory protein, Fis family (HTH_8)

(414-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.502

97.807

0.553
  pilR Acinetobacter baumannii strain A118

46.723

100

0.485

Multiple sequence alignment