Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   SYNPCCN_RS06070 Genome accession   NC_017052
Coordinates   1295442..1295954 (-) Length   170 a.a.
NCBI ID   WP_010872380.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. PCC-N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1290442..1300954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCCN_RS06045 (SYNPCCN_1168) - 1290691..1291152 (+) 462 WP_010872375.1 DUF29 domain-containing protein -
  SYNPCCN_RS06050 (SYNPCCN_1169) - 1291275..1291739 (+) 465 WP_010872376.1 DUF29 domain-containing protein -
  SYNPCCN_RS06055 (SYNPCCN_1170) - 1291880..1292416 (+) 537 WP_010872377.1 methyltransferase domain-containing protein -
  SYNPCCN_RS06060 (SYNPCCN_1171) - 1292458..1294611 (+) 2154 WP_010872378.1 hypothetical protein -
  SYNPCCN_RS06065 (SYNPCCN_1172) - 1294628..1295440 (-) 813 WP_010872379.1 hypothetical protein -
  SYNPCCN_RS06070 (SYNPCCN_1173) pilA/pilA1 1295442..1295954 (-) 513 WP_010872380.1 type IV pilin protein Machinery gene
  SYNPCCN_RS06075 (SYNPCCN_1174) pilA/pilA1 1296053..1296559 (-) 507 WP_010872381.1 type IV pilin protein Machinery gene
  SYNPCCN_RS06080 (SYNPCCN_1175) - 1296703..1298025 (-) 1323 WP_010872382.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  SYNPCCN_RS06085 (SYNPCCN_1176) - 1298180..1298785 (+) 606 WP_010872383.1 hypothetical protein -
  SYNPCCN_RS06090 (SYNPCCN_1177) - 1298789..1299226 (-) 438 WP_010872384.1 DUF29 domain-containing protein -
  SYNPCCN_RS06095 (SYNPCCN_1178) - 1299219..1299671 (-) 453 WP_010872385.1 DUF4351 domain-containing protein -
  SYNPCCN_RS06100 (SYNPCCN_1179) - 1299721..1300671 (+) 951 WP_014407173.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18477.77 Da        Isoelectric Point: 5.8518

>NTDB_id=35139 SYNPCCN_RS06070 WP_010872380.1 1295442..1295954(-) (pilA/pilA1) [Synechocystis sp. PCC 6803 substr. PCC-N]
MKAQFSIGSSSNCRHFNGTRQRGFTLLELLVVVIILGVLGAMTLPNLFSQIGKAREAEAKQILSAIGQAQQSYFFEKASF
AESNQALEISFQSNYYDISEPQLIGTDVAKSSATATNGVQQNARNFAMGVYYENQTYRVVLCQSPVPAETNSTEAPNNSS
GDCVNGIKLF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=35139 SYNPCCN_RS06070 WP_010872380.1 1295442..1295954(-) (pilA/pilA1) [Synechocystis sp. PCC 6803 substr. PCC-N]
ATGAAAGCCCAATTTTCTATCGGTAGTTCATCTAACTGTCGGCATTTCAATGGTACCCGACAAAGAGGATTTACTTTGCT
GGAACTGCTTGTTGTGGTTATTATTTTGGGAGTGTTGGGAGCAATGACGTTGCCGAATCTTTTCTCCCAGATAGGTAAAG
CGAGGGAAGCTGAGGCCAAGCAGATACTGAGTGCGATTGGTCAAGCCCAGCAGTCCTATTTTTTTGAAAAAGCCTCTTTC
GCTGAGAGCAACCAAGCTTTAGAAATTAGTTTTCAGAGCAATTATTATGATATTTCAGAGCCTCAATTAATTGGAACTGA
TGTAGCCAAAAGTAGTGCTACAGCAACTAATGGTGTTCAGCAAAATGCCCGTAATTTTGCAATGGGAGTGTACTATGAGA
ACCAAACTTATAGAGTAGTATTGTGTCAAAGTCCTGTTCCAGCCGAGACAAACAGCACAGAGGCACCAAATAACTCATCT
GGGGACTGTGTAAACGGTATTAAGCTTTTTTGA

Domains

Predicted by InterProScan.

Type IV pilin-like G and H, putative (Pilin_GH)

(56-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(20-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Synechocystis sp. PCC 6803

41.29

91.176

0.376