Detailed information NTG0035136

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SYNPCCN_RS05160
• Genome accession: NC_017052
• Coordinates: 1099457..1100611 (-)
• Length: 384 a.a.
• NCBI ID: WP_010872202.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. PCC-N
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1094457..1105611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYNPCCN_RS05120 (SYNPCCN_0992)	ribH	1094892..1095386 (-)	495	WP_010872197.1	6,7-dimethyl-8-ribityllumazine synthase	-
SYNPCCN_RS05125 (SYNPCCN_0993)	psbZ	1095491..1095679 (-)	189	WP_014407093.1	photosystem II reaction center protein PsbZ	-
SYNPCCN_RS16730 (SYNPCCN_0994)	-	1096015..1096926 (-)	912	WP_010872199.1	M48 family metallopeptidase	-
SYNPCCN_RS17785	-	1097101..1097232 (+)	132	WP_255345285.1	hypothetical protein	-
SYNPCCN_RS05145 (SYNPCCN_0995)	-	1097320..1098306 (+)	987	WP_010872200.1	S1 RNA-binding domain-containing protein	-
SYNPCCN_RS16735 (SYNPCCN_0996)	-	1098566..1099414 (+)	849	WP_010872201.1	IS630-like element ISTcSa family transposase	-
SYNPCCN_RS05160 (SYNPCCN_0997)	recF	1099457..1100611 (-)	1155	WP_010872202.1	DNA replication/repair protein RecF	Machinery gene
SYNPCCN_RS05165 (SYNPCCN_0998)	-	1100653..1102257 (-)	1605	WP_010872203.1	ABC transporter ATP-binding protein	-
SYNPCCN_RS05170 (SYNPCCN_0999)	pyk	1102526..1104301 (-)	1776	WP_010872204.1	pyruvate kinase	-
SYNPCCN_RS05175 (SYNPCCN_1000)	-	1104489..1104890 (+)	402	WP_010872205.1	DUF1824 family protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 43743.84 Da
• Isoelectric Point: 6.3184

>NTDB_id=35136 SYNPCCN_RS05160 WP_010872202.1 1099457..1100611(-) (recF) [Synechocystis sp. PCC 6803 substr. PCC-N]
MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQELVLDGAANGQIKALLERQYSV
AELEIDLRRSGRRNLRINQNQCRRQLDFLGCLNAVEFSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQ
RNALLKSLRQQWETGLALGEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPNVTWV
GDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHRDEVGFVLDDTPARTYGSQGQQRTLVLALKLAELSLIETVIGEPPLL
LLDDVLAELDLDRQGQLLMAIEDRFQTLITTTHLSRFDDRWRRSAQILKVNAGQLEERWPSEID

Nucleotide

• Length: 1155 bp

>NTDB_id=35136 SYNPCCN_RS05160 WP_010872202.1 1099457..1100611(-) (recF) [Synechocystis sp. PCC 6803 substr. PCC-N]
ATGTACCTGAAAAAACTCTATTTACGGGCCTTTCGCAATTACCTCGAAGAAGAGGTGGAATTTTCTGCTCAAAAAACCAT
TTTGGTGGGCAATAATGCCCAGGGGAAATCTAACTTATTGGAAGCGGTGGAACTGTTGGCAACGCTCAAAAGCCATCGCA
CTAGTCGGGATCAGGAATTGGTGCTAGACGGGGCGGCCAATGGGCAAATTAAAGCCCTACTGGAAAGGCAATACAGTGTG
GCGGAGTTAGAAATTGACCTACGGCGATCGGGGCGGCGCAACCTACGCATTAACCAAAATCAATGTCGTCGTCAGTTGGA
TTTTTTAGGCTGTTTAAATGCGGTGGAATTTTCCTGTTTAGATTTGGATTTAGTCCGGGGAGCGCCCGATTGTCGCCGTC
AATGGCTAGATACTTTGTTAACCCAGCTAGAACCCCTCTATGCCCATCTGTTGGGGCAGTACCAGCACATTGTTAAGCAA
AGAAATGCTCTACTAAAAAGCCTACGACAACAATGGGAAACGGGACTAGCTTTGGGGGAAGAGTCGACAGCTTCTTTGTC
TCTCTGGGACCAGCAGTTGGTGGAAATGGGCACTAGGGTAGTCCGCCGTCGGGCGAGGGGTTTAGCCCGTCTTGCTCCTT
TGGCCCAGGAATGGCATGGGCGCATTAGCGGTGGCAATGAAACCCTGACCGTTACCTATCAACCCAATGTCACCTGGGTG
GGGGATGATCCGGAAGTGGTGCACCAGGCTTTTTTAGAAAAATTAGCCCAACGGCGATCGGCAGAATTACATCTGGGGAC
AACGGTGGTGGGGCCCCATCGGGACGAAGTGGGGTTTGTCCTCGACGACACTCCCGCTAGAACCTATGGCTCCCAGGGAC
AGCAAAGAACTCTAGTCCTAGCATTAAAATTGGCGGAATTGAGCTTGATTGAAACGGTTATTGGAGAACCACCACTGTTG
TTATTGGACGATGTCTTGGCGGAATTAGACCTCGATCGCCAGGGACAATTGTTAATGGCCATTGAGGATCGTTTTCAAAC
CCTGATCACCACCACCCATTTAAGTCGTTTTGATGACCGCTGGCGGCGATCGGCCCAGATTCTCAAAGTTAATGCTGGTC
AACTAGAGGAACGGTGGCCGTCCGAAATTGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	38.727	98.177	0.38
recF	Streptococcus pneumoniae R6	39.266	92.188	0.362