Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AHTJR_RS01945 Genome accession   NZ_CP038009
Coordinates   416188..416847 (-) Length   219 a.a.
NCBI ID   WP_004641105.1    Uniprot ID   N9GSC1
Organism   Acinetobacter haemolyticus strain TJR01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411188..421847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS01910 (AHTJR_01910) - 411819..412481 (+) 663 WP_134251424.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AHTJR_RS01915 (AHTJR_01915) - 412501..413133 (+) 633 WP_004641117.1 phospholipid-binding protein MlaC -
  AHTJR_RS01920 (AHTJR_01920) - 413145..413432 (+) 288 WP_004641115.1 lipid asymmetry maintenance protein MlaB -
  AHTJR_RS01925 (AHTJR_01925) - 413483..414025 (-) 543 WP_134251426.1 hypothetical protein -
  AHTJR_RS01930 (AHTJR_01930) - 414027..415043 (-) 1017 WP_005086867.1 CorA family divalent cation transporter -
  AHTJR_RS01935 (AHTJR_01935) - 415217..415801 (+) 585 WP_026070360.1 TIGR00730 family Rossman fold protein -
  AHTJR_RS01940 (AHTJR_01940) - 415812..416219 (+) 408 WP_026070361.1 NUDIX hydrolase -
  AHTJR_RS01945 (AHTJR_01945) comF 416188..416847 (-) 660 WP_004641105.1 ComF family protein Machinery gene
  AHTJR_RS01950 (AHTJR_01950) recG 416840..418885 (-) 2046 WP_005086859.1 ATP-dependent DNA helicase RecG -
  AHTJR_RS01955 (AHTJR_01955) - 418904..419731 (+) 828 WP_134251428.1 NAD-dependent epimerase/dehydratase family protein -
  AHTJR_RS01960 (AHTJR_01960) - 419875..420855 (+) 981 WP_005086855.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25089.23 Da        Isoelectric Point: 9.6664

>NTDB_id=351232 AHTJR_RS01945 WP_004641105.1 416188..416847(-) (comF) [Acinetobacter haemolyticus strain TJR01]
MFKLLGSQTQRFLDHFTACDLCEIGAKQYFGVCKNCWDDMPWLKQTIERNQQQVFVACHYQYPINRIIQQFKYEQKLHHQ
RVLSGILQQVRLPKVQAIVPMPISTDRLVERGFNQSLLLAQGLAQTLNIPVWQPVRRLAQHSQKGLSRLERLENIEHQFI
AHPPNKIRYRKVLIVDDVITTGSSIDALSKSLRQLGCQQIYAVCLAAGGVKDSILPSVA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=351232 AHTJR_RS01945 WP_004641105.1 416188..416847(-) (comF) [Acinetobacter haemolyticus strain TJR01]
ATGTTTAAGTTACTTGGCAGTCAAACCCAACGATTCTTAGATCATTTCACTGCATGTGATTTATGTGAAATAGGAGCCAA
ACAATACTTTGGCGTATGCAAAAATTGTTGGGATGATATGCCTTGGTTAAAACAAACAATTGAACGCAATCAACAGCAGG
TCTTCGTTGCCTGCCATTATCAATATCCCATCAACCGCATTATTCAACAATTTAAATATGAGCAGAAGCTACATCACCAG
CGAGTGCTCAGTGGCATATTACAACAAGTTAGACTTCCCAAAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGATCG
CTTAGTCGAACGAGGCTTTAATCAATCTTTATTATTGGCTCAAGGCTTAGCACAAACGCTCAATATTCCAGTTTGGCAAC
CTGTTCGACGTTTAGCCCAACACTCTCAAAAAGGCTTATCCCGCCTAGAACGTTTGGAGAATATCGAGCATCAGTTTATT
GCTCATCCACCGAATAAAATCCGTTATCGCAAAGTCTTAATTGTTGATGATGTCATCACGACTGGCAGCTCGATTGATGC
ATTATCCAAAAGCTTACGCCAATTGGGCTGCCAACAGATCTATGCTGTTTGTCTTGCTGCTGGTGGGGTTAAGGACTCAA
TCCTGCCATCTGTTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9GSC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.029

95.434

0.63
  comF Acinetobacter baumannii D1279779

65.55

95.434

0.626

Multiple sequence alignment