Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DCC84_RS31830 Genome accession   NZ_CP038001
Coordinates   6728456..6728863 (-) Length   135 a.a.
NCBI ID   WP_003213736.1    Uniprot ID   -
Organism   Pseudomonas sp. SXM-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6723456..6733863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCC84_RS31815 (DCC84_31815) - 6725458..6727509 (-) 2052 WP_008434142.1 methyl-accepting chemotaxis protein -
  DCC84_RS31820 (DCC84_31820) - 6727506..6728030 (-) 525 WP_003213731.1 chemotaxis protein CheW -
  DCC84_RS31825 (DCC84_31825) pilH 6728043..6728408 (-) 366 WP_003213734.1 twitching motility response regulator PilH -
  DCC84_RS31830 (DCC84_31830) pilG 6728456..6728863 (-) 408 WP_003213736.1 twitching motility response regulator PilG Regulator
  DCC84_RS31835 (DCC84_31835) gshB 6729103..6730056 (+) 954 WP_003213738.1 glutathione synthase -
  DCC84_RS31840 (DCC84_31840) - 6730134..6731033 (+) 900 WP_003213740.1 energy transducer TonB -
  DCC84_RS31845 (DCC84_31845) - 6731101..6731670 (+) 570 WP_003213742.1 YqgE/AlgH family protein -
  DCC84_RS31850 (DCC84_31850) ruvX 6731670..6732107 (+) 438 WP_003213744.1 Holliday junction resolvase RuvX -
  DCC84_RS31855 (DCC84_31855) pyrR 6732180..6732686 (+) 507 WP_003213746.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  DCC84_RS31860 (DCC84_31860) - 6732711..6733715 (+) 1005 WP_003213748.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14868.35 Da        Isoelectric Point: 7.3838

>NTDB_id=351193 DCC84_RS31830 WP_003213736.1 6728456..6728863(-) (pilG) [Pseudomonas sp. SXM-1]
MEQHSNALKVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALAKIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=351193 DCC84_RS31830 WP_003213736.1 6728456..6728863(-) (pilG) [Pseudomonas sp. SXM-1]
ATGGAACAGCATTCCAACGCCTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGCCGCACGGCCGAAACACTGTT
GAAGAACGTAGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCAAGATTGTTGACCATCATCCACACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTAATCATGCTGTCCTCCAAGGATGGTCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCTGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGCGCGATCAAGGCCTATGTACCGGGCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72.8

92.593

0.674
  vicR Streptococcus mutans UA159

40.476

93.333

0.378

Multiple sequence alignment