Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GL188_RS00280 Genome accession   NZ_CP046359
Coordinates   45882..46652 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain 573     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40882..51652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL188_RS00260 (GL188_00260) - 42712..43149 (+) 438 WP_000076479.1 CoA-binding protein -
  GL188_RS10825 - 43190..43528 (+) 339 WP_226956234.1 hypothetical protein -
  GL188_RS00270 (GL188_00270) - 43557..44567 (-) 1011 WP_000009170.1 YeiH family protein -
  GL188_RS00275 (GL188_00275) - 44716..45885 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  GL188_RS00280 (GL188_00280) recO 45882..46652 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  GL188_RS00285 (GL188_00285) plsX 46649..47641 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  GL188_RS00290 (GL188_00290) - 47647..47880 (+) 234 WP_000136447.1 acyl carrier protein -
  GL188_RS00295 (GL188_00295) - 47917..48216 (+) 300 Protein_51 transposase family protein -
  GL188_RS00300 (GL188_00300) blpU 48419..48649 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  GL188_RS11195 - 48652..48777 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  GL188_RS10830 - 49188..49382 (+) 195 WP_000756776.1 hypothetical protein -
  GL188_RS00305 (GL188_00305) comR 49403..50296 (+) 894 WP_000343888.1 helix-turn-helix domain-containing protein Regulator
  GL188_RS00310 (GL188_00310) - 50839..51135 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=351187 GL188_RS00280 WP_000616164.1 45882..46652(+) (recO) [Streptococcus pneumoniae strain 573]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=351187 GL188_RS00280 WP_000616164.1 45882..46652(+) (recO) [Streptococcus pneumoniae strain 573]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTATTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992