Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   APRE_RS02235 Genome accession   NC_013171
Coordinates   474630..476423 (-) Length   597 a.a.
NCBI ID   WP_015777378.1    Uniprot ID   C7RG55
Organism   Anaerococcus prevotii DSM 20548     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 469630..481423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APRE_RS02220 (Apre_0414) - 470198..472579 (+) 2382 WP_015777375.1 glycogen/starch/alpha-glucan phosphorylase -
  APRE_RS02225 (Apre_0415) - 472584..473378 (+) 795 WP_015777376.1 ZIP family metal transporter -
  APRE_RS02230 (Apre_0416) - 473715..474536 (+) 822 WP_015777377.1 glycosyltransferase family 8 protein -
  APRE_RS02235 (Apre_0417) rcrQ 474630..476423 (-) 1794 WP_015777378.1 ABC transporter ATP-binding protein Regulator
  APRE_RS02240 (Apre_0418) rcrP 476416..478167 (-) 1752 WP_015777379.1 ABC transporter ATP-binding protein Regulator
  APRE_RS02245 (Apre_0419) - 478139..478621 (-) 483 WP_015777380.1 MarR family winged helix-turn-helix transcriptional regulator -
  APRE_RS02250 (Apre_0420) - 479027..479335 (+) 309 WP_015777381.1 hypothetical protein -
  APRE_RS02255 (Apre_0422) - 479941..480336 (-) 396 Protein_425 transposase -
  APRE_RS02260 (Apre_0423) - 480441..480902 (-) 462 WP_015777383.1 flavodoxin -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66840.87 Da        Isoelectric Point: 6.2191

>NTDB_id=35112 APRE_RS02235 WP_015777378.1 474630..476423(-) (rcrQ) [Anaerococcus prevotii DSM 20548]
MAKKEFQKPKNFKKTMKELMVYLKPYVSLIIISLIASIVATVLQIIGPDKLKLITNEISKGLPQMVDDKPIVKAIDMEAV
KSISLTLLILYLASLILNTIQSFIMADVTQNISKSFREKISQKVNKLPFSYYDTTSIGDILSRVTNDVDTISQSLNQAIG
NLLTSIIMLVGSLVMMLVNSPALTLTTILSSFVGFVFMTVIMKKSQKYFKDQQKNLGAINGQIEEVYTGHEVVKAYNAGS
RVIDEFEVTNEKLYTSAWKSQFLSGLMMPIMQFSGNFSYVMVCIVGGALAIEGKISFGVIVAFMIYVRLFTQPLSQIAQG
FNTLQRAAAAGERVFEFLNEKEEEKEEGKIYLDKAKGQVEFQNVKFGYKEGQTIIKDFSVKVNPGEKIAIVGPTGAGKTT
IVNLLMRFYEINSGRILLDGIDTKDITRVNLRDQFCMVLQDSWVFEGSIKENITFGQEDIEDREVIEVCKKVNLDHFIRT
LEDGYDTILNDKNTLSQGQLQLLTIARAMISKAPILILDEATSSVDTRTEIIVQDAMDKLAKGRTSFVIAHRLSTIKNAD
LILVMKDGDIVEKGKHDDLLEKGGFYADLYQAQFERE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=35112 APRE_RS02235 WP_015777378.1 474630..476423(-) (rcrQ) [Anaerococcus prevotii DSM 20548]
ATGGCTAAAAAAGAATTTCAAAAACCTAAAAATTTCAAGAAAACAATGAAAGAGCTGATGGTCTATCTCAAGCCATATGT
GTCTTTGATTATAATATCTCTTATAGCATCAATTGTAGCGACCGTCCTACAAATCATAGGACCTGACAAGCTTAAGCTTA
TCACAAACGAGATAAGTAAGGGGCTGCCTCAGATGGTAGATGACAAGCCCATAGTTAAAGCTATAGATATGGAAGCAGTA
AAGAGCATATCCCTAACTCTTCTAATCTTATATCTGGCCTCCCTTATCCTAAACACAATCCAATCCTTCATAATGGCGGA
TGTGACACAAAACATATCAAAAAGCTTTAGAGAAAAAATATCCCAAAAGGTAAACAAACTTCCCTTTTCCTACTACGATA
CGACAAGCATTGGAGATATCCTATCAAGAGTCACAAATGACGTCGATACCATAAGCCAAAGTCTAAACCAAGCTATAGGA
AATCTTTTAACAAGCATAATCATGCTAGTAGGTTCTCTAGTAATGATGTTGGTAAACTCCCCAGCCCTCACCCTTACCAC
AATCCTAAGCTCTTTTGTTGGATTTGTCTTTATGACTGTTATTATGAAAAAGTCCCAAAAATACTTTAAGGACCAACAAA
AAAACCTGGGAGCAATCAACGGACAAATCGAGGAAGTTTACACAGGCCATGAAGTAGTAAAGGCCTATAATGCTGGCTCT
AGGGTTATAGATGAGTTTGAAGTAACTAACGAAAAACTTTATACAAGTGCATGGAAGAGTCAATTTCTATCTGGCCTTAT
GATGCCAATCATGCAATTTTCAGGAAACTTCTCTTATGTAATGGTTTGTATAGTAGGAGGCGCCCTTGCCATAGAGGGTA
AGATTTCCTTCGGTGTGATTGTTGCCTTTATGATTTATGTAAGACTTTTCACCCAACCTCTCTCCCAAATCGCCCAAGGC
TTCAATACCCTACAAAGAGCTGCCGCAGCTGGAGAAAGAGTATTCGAATTCCTCAATGAAAAGGAAGAAGAAAAAGAAGA
AGGTAAAATCTACCTAGATAAGGCCAAGGGCCAAGTCGAGTTTCAAAATGTTAAGTTCGGCTACAAGGAAGGTCAAACTA
TAATCAAGGACTTCAGTGTAAAGGTAAATCCAGGAGAGAAAATCGCCATAGTTGGCCCTACTGGAGCAGGTAAGACTACC
ATAGTCAACCTCTTGATGAGATTCTACGAGATAAACAGCGGAAGAATCCTCCTAGATGGGATCGATACGAAAGATATAAC
TAGGGTTAATCTCAGAGACCAATTCTGTATGGTTCTCCAAGACTCCTGGGTCTTTGAAGGAAGTATCAAGGAAAATATTA
CCTTTGGCCAAGAAGATATCGAAGATAGGGAAGTCATAGAAGTATGTAAGAAAGTAAATCTCGACCACTTCATAAGAACC
CTAGAAGATGGCTATGATACAATCCTTAACGACAAAAATACCCTTTCTCAAGGCCAACTTCAGCTACTAACCATAGCCCG
TGCCATGATAAGCAAGGCCCCTATCCTAATACTTGATGAGGCAACAAGTTCTGTCGATACTAGGACAGAGATTATAGTCC
AAGACGCCATGGACAAGCTCGCCAAGGGAAGGACCTCCTTCGTCATAGCCCACAGACTTTCAACAATCAAAAACGCCGAC
CTAATTCTCGTTATGAAAGACGGCGATATAGTAGAAAAAGGCAAACACGACGACCTACTAGAAAAAGGTGGCTTCTACGC
GGATCTTTACCAAGCTCAGTTTGAAAGAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(30-314)

ABC transporter (ABC_tran)

(376-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C7RG55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.778

98.157

0.538

Multiple sequence alignment