Detailed information NTG0351074

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CLQ43_RS20950
• Genome accession: NZ_CP037963
• Coordinates: 4204840..4205640 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain SCKP020135
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4199840..4210640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLQ43_RS20915 (CLQ43_20925)	gspH	4199996..4200511 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
CLQ43_RS20920 (CLQ43_20930)	gspI	4200508..4200873 (+)	366	WP_048993360.1	type II secretion system minor pseudopilin GspI	-
CLQ43_RS20925 (CLQ43_20935)	gspJ	4200870..4201466 (+)	597	WP_064152192.1	type II secretion system minor pseudopilin GspJ	-
CLQ43_RS20930 (CLQ43_20940)	gspK	4201463..4202449 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
CLQ43_RS20935 (CLQ43_20945)	gspL	4202436..4203629 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
CLQ43_RS20940 (CLQ43_20950)	-	4203622..4204107 (+)	486	WP_025368434.1	type II secretion system protein M	-
CLQ43_RS20945 (CLQ43_20955)	-	4204097..4204843 (+)	747	WP_064152193.1	type II secretion system protein N	-
CLQ43_RS20950 (CLQ43_20960)	pilD	4204840..4205640 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
CLQ43_RS20955 (CLQ43_20965)	hrpB	4205688..4208117 (-)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
CLQ43_RS20960 (CLQ43_20970)	thpR	4208190..4208726 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
CLQ43_RS20965 (CLQ43_20975)	sfsA	4208726..4209442 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
CLQ43_RS20970 (CLQ43_20980)	dksA	4209605..4210060 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=351074 CLQ43_RS20950 WP_004145898.1 4204840..4205640(+) (pilD) [Klebsiella pneumoniae strain SCKP020135]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=351074 CLQ43_RS20950 WP_004145898.1 4204840..4205640(+) (pilD) [Klebsiella pneumoniae strain SCKP020135]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425