Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RA0C_RS01950 Genome accession   NC_017045
Coordinates   380239..380847 (+) Length   202 a.a.
NCBI ID   WP_004919077.1    Uniprot ID   E4T8W1
Organism   Riemerella anatipestifer ATCC 11845 = DSM 15868     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 375239..385847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA0C_RS10520 (RA0C_0408) - 375497..377254 (+) 1758 WP_013446731.1 S8 family serine peptidase -
  RA0C_RS10525 (RA0C_0409) - 377254..379926 (+) 2673 WP_013446732.1 PKD domain-containing protein -
  RA0C_RS01950 (RA0C_0410) recR 380239..380847 (+) 609 WP_004919077.1 recombination mediator RecR Machinery gene
  RA0C_RS01955 (RA0C_0411) - 380854..381711 (+) 858 WP_013446733.1 glycosyltransferase family 2 protein -
  RA0C_RS01960 (RA0C_0412) secG 381750..382112 (-) 363 WP_013446734.1 preprotein translocase subunit SecG -
  RA0C_RS01965 (RA0C_0413) - 382254..384296 (-) 2043 WP_013446735.1 M16 family metallopeptidase -
  RA0C_RS01970 (RA0C_0414) - 384309..385622 (-) 1314 WP_004919072.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22424.76 Da        Isoelectric Point: 4.9891

>NTDB_id=35103 RA0C_RS01950 WP_004919077.1 380239..380847(+) (recR) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
MNFPSKVLEKAVEEISGLPGIGRKSALRLALHLLRQPSSQGLALGDAIQNLVTEIKYCKECHNFSDTDICEICADDSRHA
ELLCVVEDVRDVMAIENTGKFKGKYLVLGGKISPMEGIGPQQLNIETLESKLEIGEIEEVIFALSATMEGDTTVYYLYKK
FKHFDIKFSNIARGISVGDELEYADEVSLGRSILNRIPYKGH

Nucleotide


Download         Length: 609 bp        

>NTDB_id=35103 RA0C_RS01950 WP_004919077.1 380239..380847(+) (recR) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
ATGAATTTTCCAAGTAAGGTTTTAGAAAAAGCAGTAGAAGAAATATCAGGTCTCCCAGGGATAGGCAGAAAGTCGGCTCT
CAGACTAGCGCTTCATTTGCTTAGACAACCGAGTTCACAAGGATTAGCTCTAGGCGATGCTATACAAAATCTAGTTACAG
AGATAAAATATTGTAAAGAATGCCATAACTTTTCGGACACAGATATTTGCGAAATTTGTGCAGATGACAGTAGACACGCT
GAACTCCTATGCGTTGTGGAAGATGTGAGAGATGTAATGGCGATAGAAAACACAGGAAAATTCAAAGGAAAATATTTGGT
TTTAGGAGGAAAAATATCGCCTATGGAAGGTATTGGACCTCAACAATTAAATATAGAAACTTTAGAAAGCAAACTAGAAA
TAGGGGAGATAGAGGAGGTTATTTTTGCACTATCTGCCACTATGGAGGGCGATACCACCGTGTATTATTTGTATAAAAAG
TTTAAGCATTTTGACATTAAATTCTCCAATATTGCGAGAGGGATTTCCGTAGGAGATGAACTAGAGTACGCCGATGAAGT
TTCTTTGGGGAGGTCTATTTTGAACCGAATACCTTATAAAGGTCATTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-171)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4T8W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.837

97.03

0.406
  recR Streptococcus pneumoniae R6

40.306

97.03

0.391
  recR Bacillus subtilis subsp. subtilis str. 168

39.286

97.03

0.381