Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GL185_RS07610 Genome accession   NZ_CP046357
Coordinates   1517498..1518595 (-) Length   365 a.a.
NCBI ID   WP_000266669.1    Uniprot ID   C1CBK4
Organism   Streptococcus pneumoniae strain 525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1512498..1523595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL185_RS07595 (GL185_07730) - 1512964..1514586 (-) 1623 WP_000958769.1 ATP-binding cassette domain-containing protein -
  GL185_RS07600 (GL185_07735) trpS 1514792..1515817 (+) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  GL185_RS07605 (GL185_07740) guaB 1515969..1517447 (+) 1479 WP_000073428.1 IMP dehydrogenase -
  GL185_RS07610 (GL185_07745) recF 1517498..1518595 (-) 1098 WP_000266669.1 DNA replication/repair protein RecF Machinery gene
  GL185_RS07615 (GL185_07750) yaaA 1518598..1518966 (-) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  GL185_RS07620 (GL185_07755) - 1519125..1520375 (+) 1251 WP_000424267.1 pitrilysin family protein -
  GL185_RS07625 (GL185_07760) - 1520372..1521655 (+) 1284 WP_000170215.1 pitrilysin family protein -
  GL185_RS07630 (GL185_07765) rodZ 1521697..1522518 (+) 822 WP_001227958.1 cytoskeleton protein RodZ -
  GL185_RS07635 (GL185_07770) pgsA 1522529..1523074 (+) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41960.00 Da        Isoelectric Point: 8.6746

>NTDB_id=351011 GL185_RS07610 WP_000266669.1 1517498..1518595(-) (recF) [Streptococcus pneumoniae strain 525]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=351011 GL185_RS07610 WP_000266669.1 1517498..1518595(-) (recF) [Streptococcus pneumoniae strain 525]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CBK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.726

100

0.997
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46