Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GL185_RS07255 Genome accession   NZ_CP046357
Coordinates   1458128..1458898 (-) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain 525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1453128..1463898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL185_RS07225 (GL185_07370) - 1453645..1453941 (-) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -
  GL185_RS07230 (GL185_07375) comR 1454484..1455377 (-) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  GL185_RS11215 - 1455398..1455592 (-) 195 WP_000756776.1 hypothetical protein -
  GL185_RS11440 - 1456003..1456128 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  GL185_RS07235 (GL185_07380) blpU 1456131..1456361 (-) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  GL185_RS07240 (GL185_07385) - 1456564..1456854 (-) 291 Protein_1458 IS5/IS1182 family transposase -
  GL185_RS07245 (GL185_07390) - 1456900..1457133 (-) 234 WP_000136447.1 acyl carrier protein -
  GL185_RS07250 (GL185_07395) plsX 1457139..1458131 (-) 993 WP_000717467.1 phosphate acyltransferase PlsX -
  GL185_RS07255 (GL185_07400) recO 1458128..1458898 (-) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  GL185_RS07260 (GL185_07405) - 1458895..1460064 (-) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  GL185_RS07265 (GL185_07410) - 1460213..1461223 (+) 1011 WP_000009171.1 YeiH family protein -
  GL185_RS11220 - 1461242..1461592 (-) 351 WP_000693178.1 hypothetical protein -
  GL185_RS07275 (GL185_07420) - 1461633..1462070 (-) 438 WP_061633093.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=351002 GL185_RS07255 WP_000616164.1 1458128..1458898(-) (recO) [Streptococcus pneumoniae strain 525]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=351002 GL185_RS07255 WP_000616164.1 1458128..1458898(-) (recO) [Streptococcus pneumoniae strain 525]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992