Detailed information NTG0350828

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GL184_RS00105
• Genome accession: NZ_CP046356
• Coordinates: 17859..18956 (-)
• Length: 365 a.a.
• NCBI ID: WP_000266669.1
• Uniprot ID: C1CBK4
• Organism: Streptococcus pneumoniae strain 521
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 12859..23956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GL184_RS00090 (GL184_00090)	-	13325..14947 (-)	1623	WP_000958769.1	ABC-F family ATP-binding cassette domain-containing protein	-
GL184_RS00095 (GL184_00095)	trpS	15153..16178 (+)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
GL184_RS00100 (GL184_00100)	guaB	16330..17808 (+)	1479	WP_000073428.1	IMP dehydrogenase	-
GL184_RS00105 (GL184_00105)	recF	17859..18956 (-)	1098	WP_000266669.1	DNA replication/repair protein RecF	Machinery gene
GL184_RS00110 (GL184_00110)	yaaA	18959..19327 (-)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
GL184_RS00115 (GL184_00115)	yfmF	19486..20736 (+)	1251	WP_000424267.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GL184_RS00120 (GL184_00120)	yfmH	20733..22016 (+)	1284	WP_000170215.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GL184_RS00125 (GL184_00125)	rodZ	22058..22879 (+)	822	WP_001227958.1	cytoskeleton protein RodZ	-
GL184_RS00130 (GL184_00130)	pgsA	22890..23435 (+)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41960.00 Da
• Isoelectric Point: 8.6746

>NTDB_id=350828 GL184_RS00105 WP_000266669.1 17859..18956(-) (recF) [Streptococcus pneumoniae strain 521]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=350828 GL184_RS00105 WP_000266669.1 17859..18956(-) (recF) [Streptococcus pneumoniae strain 521]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: C1CBK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46