Detailed information NTG0350733

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E2E32_RS21665
• Genome accession: NZ_CP037928
• Coordinates: 4424022..4424822 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae subsp. pneumoniae strain KP-8788
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4419022..4429822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E2E32_RS21630 (E2E32_22380)	gspH	4419178..4419693 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
E2E32_RS21635 (E2E32_22385)	gspI	4419690..4420055 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
E2E32_RS21640 (E2E32_22390)	gspJ	4420052..4420648 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
E2E32_RS21645 (E2E32_22395)	gspK	4420645..4421631 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
E2E32_RS21650 (E2E32_22400)	gspL	4421618..4422811 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
E2E32_RS21655 (E2E32_22405)	-	4422804..4423289 (+)	486	WP_004151943.1	type II secretion system protein M	-
E2E32_RS21660 (E2E32_22410)	-	4423279..4424025 (+)	747	WP_004145897.1	type II secretion system protein N	-
E2E32_RS21665 (E2E32_22415)	pilD	4424022..4424822 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
E2E32_RS21670 (E2E32_22420)	hrpB	4424870..4427299 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
E2E32_RS21675 (E2E32_22425)	thpR	4427372..4427908 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
E2E32_RS21680 (E2E32_22430)	sfsA	4427908..4428624 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
E2E32_RS21685 (E2E32_22435)	dksA	4428787..4429242 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=350733 E2E32_RS21665 WP_002888947.1 4424022..4424822(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain KP-8788]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=350733 E2E32_RS21665 WP_002888947.1 4424022..4424822(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain KP-8788]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425