Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E1B22_RS03400 Genome accession   NZ_CP037895
Coordinates   796834..798231 (-) Length   465 a.a.
NCBI ID   WP_135224566.1    Uniprot ID   -
Organism   Thermaerobacter sp. FW80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 791834..803231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1B22_RS03380 (E1B22_03380) - 792366..792932 (-) 567 WP_135224562.1 CarD family transcriptional regulator -
  E1B22_RS03385 (E1B22_03385) - 793171..793566 (+) 396 WP_135224563.1 DUF1573 domain-containing protein -
  E1B22_RS03390 (E1B22_03390) - 794286..795008 (-) 723 WP_135224564.1 phosphoadenylyl-sulfate reductase -
  E1B22_RS03395 (E1B22_03395) disA 795572..796639 (-) 1068 WP_135224565.1 DNA integrity scanning diadenylate cyclase DisA -
  E1B22_RS03400 (E1B22_03400) radA 796834..798231 (-) 1398 WP_135224566.1 DNA repair protein RadA Machinery gene
  E1B22_RS03405 (E1B22_03405) - 798570..801080 (-) 2511 WP_135224567.1 ATP-dependent Clp protease ATP-binding subunit -
  E1B22_RS03410 (E1B22_03410) - 801103..802176 (-) 1074 WP_135224568.1 protein arginine kinase -
  E1B22_RS03415 (E1B22_03415) - 802190..802741 (-) 552 WP_135225927.1 UvrB/UvrC motif-containing protein -
  E1B22_RS03420 (E1B22_03420) - 802683..803231 (-) 549 WP_135225926.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 47987.43 Da        Isoelectric Point: 8.3637

>NTDB_id=350533 E1B22_RS03400 WP_135224566.1 796834..798231(-) (radA) [Thermaerobacter sp. FW80]
MPPRTVFACQACGHLSPKWMGRCPECGAWNTFVEERAAAPAAPGGRRGRGGLAGALAGAREPAEPIALRDVGAGEPPRLG
TGMAELDRVLGGGFVPGSVVLVGGDPGVGKSTLLLQVSQNLASQGLPVLYVTGEESAAQVRLRAQRLGALAPSLLVLPTT
DALAAAEAIGRYQPALAVIDSIQTLAHPEVGSAPGSVSQVRESAALLLAVAKRLPVVLVLVGHVTRAGTIAGPRVVEHMV
DAVLYFESPAHHAYRLLRAIKNRFGATHEIALFEMQDRGLAEVANPSARLLSERPRGAAGSAVVAAVEGTRPLLVEIQAL
VAPAPYGQPRRVATGLDLGRAALVMAVLDKRAGLHLGGCDVYLKVAGGVRVDEPALDLGLAVALASSHRDRPADSEAVIF
GELGLAGEVRSVQRVDERVREAQRLGFQRVILPRGNVTPALAAAAGGLELVPVGRVEEAIAAAVG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=350533 E1B22_RS03400 WP_135224566.1 796834..798231(-) (radA) [Thermaerobacter sp. FW80]
TTGCCCCCGCGCACCGTCTTCGCGTGCCAGGCGTGCGGCCACCTGAGCCCCAAGTGGATGGGCCGCTGCCCCGAGTGCGG
GGCGTGGAACACCTTCGTCGAGGAACGCGCCGCGGCGCCCGCCGCCCCCGGCGGGCGCCGCGGCCGGGGCGGGCTCGCGG
GCGCCCTGGCCGGCGCCCGCGAGCCCGCCGAGCCCATCGCCCTCCGGGACGTGGGCGCCGGCGAACCGCCGCGGCTGGGG
ACCGGCATGGCCGAGCTCGATCGGGTGCTGGGGGGCGGGTTCGTCCCGGGATCGGTGGTCCTGGTGGGCGGCGACCCCGG
GGTGGGCAAGTCGACCCTGCTCCTGCAGGTCTCCCAGAACCTGGCGTCCCAGGGGCTCCCCGTCCTCTACGTCACCGGCG
AGGAGTCGGCCGCCCAGGTGCGGCTGCGCGCCCAGCGGCTGGGGGCGCTGGCGCCGTCCCTCCTGGTGCTGCCCACCACC
GACGCCCTGGCGGCGGCGGAGGCCATCGGCCGGTACCAGCCGGCGCTGGCGGTCATCGACTCGATCCAGACCCTGGCCCA
CCCCGAGGTGGGGTCGGCCCCGGGCAGCGTCAGCCAGGTGCGGGAGAGCGCCGCCCTCCTGCTGGCGGTGGCCAAGCGGC
TGCCGGTGGTCCTGGTCCTGGTGGGGCACGTGACCCGGGCGGGGACCATCGCCGGGCCGCGGGTGGTCGAGCACATGGTG
GACGCCGTCCTCTACTTCGAGTCGCCGGCCCACCATGCCTACCGCCTGCTGCGGGCGATCAAGAACCGCTTCGGCGCCAC
CCACGAGATCGCCCTCTTCGAGATGCAGGACCGCGGCCTGGCGGAGGTGGCCAATCCCTCGGCGCGGCTCCTCTCGGAGC
GTCCGCGGGGGGCGGCGGGCTCGGCGGTGGTGGCGGCGGTGGAGGGCACGCGCCCCCTGCTGGTGGAGATCCAGGCGCTG
GTGGCGCCGGCGCCCTACGGGCAGCCGCGCCGGGTGGCCACCGGGCTGGACCTGGGGCGGGCGGCCCTGGTGATGGCCGT
GCTGGACAAGCGCGCGGGCCTGCACCTGGGCGGCTGCGACGTGTACCTCAAGGTGGCCGGCGGGGTGCGGGTGGACGAAC
CGGCCCTCGACCTGGGGCTGGCCGTGGCCCTGGCCTCCAGCCATCGCGATCGACCGGCGGACTCCGAGGCGGTGATCTTC
GGCGAGCTCGGCCTGGCGGGCGAGGTCCGCTCGGTCCAGCGGGTCGACGAGCGGGTCCGGGAGGCGCAGCGCCTGGGGTT
CCAGCGGGTGATCCTGCCGCGGGGCAACGTGACCCCGGCGCTGGCGGCCGCGGCGGGCGGCCTCGAGCTGGTGCCCGTCG
GGCGCGTCGAGGAGGCGATCGCGGCCGCCGTGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(369-436)

KaiC (ATPase)

(80-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.732

99.355

0.514
  radA Streptococcus pneumoniae Rx1

50.805

93.548

0.475
  radA Streptococcus pneumoniae D39

50.805

93.548

0.475
  radA Streptococcus pneumoniae R6

50.805

93.548

0.475
  radA Streptococcus pneumoniae TIGR4

50.805

93.548

0.475
  radA Streptococcus mitis NCTC 12261

50.805

93.548

0.475
  radA Streptococcus mitis SK321

50.805

93.548

0.475

Multiple sequence alignment