Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GK046_RS17265 | Genome accession | NZ_CP046259 |
| Coordinates | 3589732..3590172 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360902.1 | Uniprot ID | A7ZHJ7 |
| Organism | Escherichia coli strain ECO2947 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3584732..3595172
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GK046_RS17245 (GK046_17245) | coaE | 3585222..3585842 (-) | 621 | WP_001269531.1 | dephospho-CoA kinase | - |
| GK046_RS24800 | - | 3585867..3585911 (+) | 45 | WP_120795372.1 | protein YacM | - |
| GK046_RS17250 (GK046_17250) | guaC | 3586067..3587110 (+) | 1044 | WP_001217338.1 | GMP reductase | - |
| GK046_RS17255 (GK046_17255) | hofC | 3587145..3588347 (-) | 1203 | WP_000157238.1 | protein transport protein HofC | - |
| GK046_RS17260 (GK046_17260) | pilB | 3588337..3589722 (-) | 1386 | WP_001025154.1 | type II secretion system protein GspE | Machinery gene |
| GK046_RS17265 (GK046_17265) | pilA | 3589732..3590172 (-) | 441 | WP_000360902.1 | prepilin peptidase-dependent pilin | Machinery gene |
| GK046_RS17270 (GK046_17270) | nadC | 3590375..3591268 (-) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GK046_RS17275 (GK046_17275) | ampD | 3591356..3591907 (+) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GK046_RS17280 (GK046_17280) | ampE | 3591904..3592758 (+) | 855 | WP_000172000.1 | beta-lactamase regulator AmpE | - |
| GK046_RS17285 (GK046_17285) | aroP | 3592801..3594174 (-) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15630.76 Da Isoelectric Point: 4.5559
>NTDB_id=350290 GK046_RS17265 WP_000360902.1 3589732..3590172(-) (pilA) [Escherichia coli strain ECO2947]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALHQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALHQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=350290 GK046_RS17265 WP_000360902.1 3589732..3590172(-) (pilA) [Escherichia coli strain ECO2947]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCATC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCATC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
41.791 |
91.781 |
0.384 |
| pilA | Haemophilus influenzae Rd KW20 |
41.045 |
91.781 |
0.377 |