Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HPF_RS01660 Genome accession   NZ_CP037867
Coordinates   333508..334884 (-) Length   458 a.a.
NCBI ID   WP_133155572.1    Uniprot ID   A0A4P6WV53
Organism   Hydrogenophaga pseudoflava strain DSM 1084     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328508..339884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF_RS01630 (HPF_01625) - 328663..329394 (+) 732 WP_133155568.1 response regulator transcription factor -
  HPF_RS01635 (HPF_01630) - 329394..330647 (+) 1254 WP_207959291.1 ATP-binding protein -
  HPF_RS01640 (HPF_01635) - 330959..331789 (-) 831 WP_133155569.1 glycosyltransferase -
  HPF_RS01645 (HPF_01640) - 331792..332001 (-) 210 WP_066159976.1 zinc-finger domain-containing protein -
  HPF_RS01650 (HPF_01645) - 332012..332953 (-) 942 WP_133155570.1 branched-chain amino acid transaminase -
  HPF_RS01655 (HPF_01650) - 333049..333447 (-) 399 WP_133155571.1 glycerate kinase -
  HPF_RS01660 (HPF_01655) radA 333508..334884 (-) 1377 WP_133155572.1 DNA repair protein RadA Machinery gene
  HPF_RS01665 (HPF_01660) - 334952..336100 (+) 1149 WP_133155573.1 hypothetical protein -
  HPF_RS01670 (HPF_01665) - 336091..336396 (-) 306 WP_133155574.1 antibiotic biosynthesis monooxygenase -
  HPF_RS01675 (HPF_01670) - 336399..337439 (-) 1041 WP_133155575.1 nitronate monooxygenase -
  HPF_RS01680 (HPF_01675) hpaR 337536..338024 (+) 489 WP_133155576.1 homoprotocatechuate degradation operon regulator HpaR -
  HPF_RS01685 (HPF_01680) - 338029..338673 (+) 645 WP_133155577.1 fumarylacetoacetate hydrolase family protein -
  HPF_RS01690 (HPF_01685) - 338670..339443 (+) 774 WP_133155578.1 fumarylacetoacetate hydrolase family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48275.51 Da        Isoelectric Point: 7.2387

>NTDB_id=350287 HPF_RS01660 WP_133155572.1 333508..334884(-) (radA) [Hydrogenophaga pseudoflava strain DSM 1084]
MAKEKTIYTCNECGGTSPRWLGKCPHCNAWNTLIESVAESSAPTKNRFAALAKTAEVTTLADIEATDVQRTPTGHDELDR
VLGGGVVEGGVVLIGGDPGIGKSTLLLQALDALQRAGQKTLYVTGEESGAQVALRSRRLGLDGSQVQVLAEIQLEKILAT
LTAHQPAIAVIDSIQTVYSEQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDTVLYFEG
DTHSSFRLIRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVMVTLEGTRPMLVEIQALVDSGGPSP
RRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGRALPKGFIAFGEVGLAGEV
RPAPRGQERLKEAAKLGFSVAVVPKANAPKKNDKAFEGLTIHGVDRIEEAMELARSLA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=350287 HPF_RS01660 WP_133155572.1 333508..334884(-) (radA) [Hydrogenophaga pseudoflava strain DSM 1084]
ATGGCCAAAGAAAAGACGATCTACACCTGCAACGAGTGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCGCACTG
CAACGCCTGGAACACGCTGATCGAATCGGTCGCCGAATCCAGCGCCCCGACCAAGAACCGCTTCGCCGCACTGGCCAAGA
CGGCCGAGGTCACCACCCTAGCCGACATCGAAGCCACCGACGTGCAGCGCACGCCCACCGGCCACGACGAACTCGACCGC
GTGCTGGGCGGCGGCGTGGTGGAAGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGTT
GCAGGCGCTGGACGCGCTGCAGCGCGCCGGCCAGAAAACCCTGTACGTGACGGGCGAAGAGTCGGGCGCCCAGGTCGCGC
TGCGCTCGCGCCGGCTCGGACTGGACGGTTCGCAGGTTCAGGTGCTGGCCGAGATCCAGCTGGAGAAGATCCTCGCCACG
CTGACGGCGCACCAGCCCGCCATCGCGGTGATCGACTCGATCCAGACCGTGTATTCCGAACAGCTCACCAGCGCGCCGGG
TTCGGTGGCGCAGGTGCGCGAATGCGCCGCCCACCTCACCCGCGCGGCCAAGGCCTCGGGCACGGCCATCGTGCTGGTGG
GCCACGTGACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGC
GACACGCACAGCAGCTTCCGCCTGATCCGCGCCATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTGTTCGCGAT
GACGGAAAAGGGTCTCAAGGGCGTGAGCAACCCGAGCGCGATCTTCCTGTCGCAACACTCGGAACCCGTGCCCGGCAGCT
GCGTGATGGTGACGCTGGAAGGCACGCGGCCCATGCTGGTGGAGATCCAGGCGCTGGTGGACAGCGGCGGCCCCTCGCCG
CGGCGCCTGTCGGTGGGTCTGGACCGCGACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCGGGCGTGGCCTG
CATGGACCAGGACGTGTTCGTCAACGCGGTGGGCGGCGTGCGCATCAGCGAGCCGGCGGCCGACCTGGCCGTCATGCTGG
CCATCACCAGCAGCCTGCGCGGCCGCGCCCTGCCCAAGGGCTTCATCGCCTTCGGCGAGGTGGGCCTGGCCGGAGAGGTG
CGCCCCGCGCCACGCGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTCTCCGTCGCGGTGGTGCCCAAGGCGAA
TGCTCCGAAGAAGAACGACAAGGCCTTTGAAGGCCTGACCATCCACGGCGTGGACCGCATCGAAGAGGCCATGGAACTGG
CCCGCAGCCTGGCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-454)

AAA domain (AAA_25)

(63-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6WV53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.246

99.563

0.48
  radA Streptococcus pneumoniae Rx1

47.541

93.231

0.443
  radA Streptococcus pneumoniae D39

47.541

93.231

0.443
  radA Streptococcus pneumoniae R6

47.541

93.231

0.443
  radA Streptococcus pneumoniae TIGR4

47.541

93.231

0.443
  radA Streptococcus mitis SK321

47.541

93.231

0.443
  radA Streptococcus mitis NCTC 12261

47.307

93.231

0.441

Multiple sequence alignment