Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GKC13_RS06450 Genome accession   NZ_CP046134
Coordinates   1245031..1245627 (-) Length   198 a.a.
NCBI ID   WP_014608122.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1240031..1250627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS06415 (GKC13_06480) coaE 1240617..1241210 (-) 594 WP_041827324.1 dephospho-CoA kinase -
  GKC13_RS06420 (GKC13_06485) mutM 1241207..1242028 (-) 822 WP_022096972.1 DNA-formamidopyrimidine glycosylase -
  GKC13_RS06425 (GKC13_06490) era 1242075..1242974 (-) 900 WP_207563306.1 GTPase Era -
  GKC13_RS10115 (GKC13_06495) - 1242993..1243397 (-) 405 WP_002946201.1 diacylglycerol kinase family protein -
  GKC13_RS06430 (GKC13_06500) ybeY 1243378..1243875 (-) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  GKC13_RS10120 - 1244094..1244890 (-) 797 Protein_1277 PRD domain-containing protein -
  GKC13_RS06450 (GKC13_06520) recR 1245031..1245627 (-) 597 WP_014608122.1 recombination mediator RecR Machinery gene
  GKC13_RS06455 (GKC13_06525) pbp2b 1245737..1247851 (-) 2115 WP_014608121.1 penicillin-binding protein PBP2B -
  GKC13_RS06460 (GKC13_06530) - 1247973..1248809 (-) 837 WP_014608120.1 NAD(P)H-hydrate dehydratase -
  GKC13_RS06465 (GKC13_06535) - 1248813..1249667 (-) 855 WP_024009803.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  GKC13_RS06470 (GKC13_06540) - 1249840..1250031 (-) 192 WP_011227003.1 hypothetical protein -
  GKC13_RS06475 (GKC13_06545) - 1250280..1250492 (-) 213 WP_011680924.1 lysophospholipase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21802.00 Da        Isoelectric Point: 4.5326

>NTDB_id=350184 GKC13_RS06450 WP_014608122.1 1245031..1245627(-) (recR) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MLYPTPIAKLIDSFSKFPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=350184 GKC13_RS06450 WP_014608122.1 1245031..1245627(-) (recR) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAATTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.692

98.485

0.47